Reaction Site Mapping of Xenobiotic Biotransformations. - Scott Boyer; Catrin Hasselgren Arnby; Lars Carlsson; James Smith 002; Viktor Stein; Robert C. Glen (J. Chem. Inf. Model., 2007)

SPORCalc: A development of a database analysis that provides putative metabolic enzyme reactions for ligand-based drug design. - James Smith 002; Viktor Stein (Comput. Biol. Chem., 2009)

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. - Tony E. Lewis; Ian Sillitoe; Antonina Andreeva; Tom L. Blundell; Daniel W. A. Buchan; Cyrus Chothia; Alison L. Cuff; Jose M. Dana; Ioannis Filippis; Julian Gough; Sarah Hunter; David T. Jones; et al. (Nucleic Acids Res., 2013)

Extensible and Executable Stochastic Models of Fatty Acid and Lipid Metabolism. - Argyris Zardilis; João Dias; Animesh Acharjee; James Smith 002 (CMSB, 2014)

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank. - Preeti Choudhary; Zukang Feng; John M. Berrisford; Henry Chao; Yasuyo Ikegawa; Ezra Peisach; Dennis W. Piehl; James Smith 002; Ahsan Tanweer; Mihaly Varadi; John D. Westbrook; Jasmine Young; et al. (Database J. Biol. Databases Curation, 2024)