Design and Development of Autonomous Intelligence Smart Sensors. - Ramesh Kolluru; Rasiah Loganantharaj; Stanford A. Smith; P. Bayyapu; G. LaBauve; James Spencer; Jeffery Hooker; Steve Simmons; T. M. Hebert (IEA/AIE, 2000)

Sentimentor: Sentiment Analysis of Twitter Data. - James Spencer; Gulden Uchyigit (SDAD@ECML/PKDD, 2012)

The khmer software package: enabling efficient nucleotide sequence analysis. - Michael R. Crusoe; Hussien F. Alameldin; Sherine Awad; Elmar Boucher; Adam Caldwell; Reed Cartwright; Amanda Charbonneau; Bede Constantinides; Greg Edvenson; Scott A. Fay; Jacob Fenton; Thomas Fenzl; et al. (F1000Research, 2015)

Robust quaternary fountain codes in AWGN interference. - James Spencer; Khaled Farouq Hayajneh; Shahram Yousefi (IET Commun., 2018)

An Efficient Computational Assay for β-Lactam Antibiotic Breakdown by Class A β-Lactamases. - Viivi H. A. Hirvonen; Katharine Hammond; Ewa I. Chudyk; Michael A. L. Limb; James Spencer; Adrian J. Mulholland; Marc van der Kamp (J. Chem. Inf. Model., 2019)

Simulations of Shikimate Dehydrogenase from Mycobacterium tuberculosis in Complex with 3-Dehydroshikimate and NADPH Suggest Strategies for MtbSDH Inhibition. - Auradee Punkvang; Pharit Kamsri; Adrian J. Mulholland; James Spencer; Supa Hannongbua; Pornpan Pungpo (J. Chem. Inf. Model., 2019)

Discovery of New and Potent InhA Inhibitors as Antituberculosis Agents: Structure-Based Virtual Screening Validated by Biological Assays and X-ray Crystallography. - Pharit Kamsri; Chayanin Hanwarinroj; Naruedon Phusi; Thimpika Pornprom; Kampanart Chayajarus; Auradee Punkvang; Nitima Suttipanta; Potjanee Srimanote; Khomson Suttisintong; Chomphunuch Songsiriritthigul; Patchreenart Saparpakorn; Supa Hannongbua; et al. (J. Chem. Inf. Model., 2020)

Crystallography and QM/MM Simulations Identify Preferential Binding of Hydrolyzed Carbapenem and Penem Antibiotics to the L1 Metallo-β-Lactamase in the Imine Form. - Rebecca M. Twidale; Philip Hinchliffe; James Spencer; Adrian J. Mulholland (J. Chem. Inf. Model., 2021)

Multiscale Workflow for Modeling Ligand Complexes of Zinc Metalloproteins. - Zongfan Yang; Rebecca M. Twidale; Silvia Gervasoni; Reynier Suardíaz; Charlotte K. Colenso; Eric J. M. Lang; James Spencer; Adrian J. Mulholland (J. Chem. Inf. Model., 2021)

Identification of Potent DNA Gyrase Inhibitors Active against Mycobacterium tuberculosis. - Bongkochawan Pakamwong; Paptawan Thongdee; Bundit Kamsri; Naruedon Phusi; Pharit Kamsri; Auradee Punkvang; Sombat Ketrat; Patchreenart Saparpakorn; Supa Hannongbua; Kanchiyaphat Ariyachaokun; Khomson Suttisintong; Sanya Sureram; et al. (J. Chem. Inf. Model., 2022)

Virtual Screening Identifies Novel and Potent Inhibitors of Mycobacterium tuberculosis PknB with Antibacterial Activity. - Paptawan Thongdee; Chayanin Hanwarinroj; Bongkochawan Pakamwong; Pharit Kamsri; Auradee Punkvang; Jiraporn Leanpolchareanchai; Sombat Ketrat; Patchreenart Saparpakorn; Supa Hannongbua; Kanchiyaphat Ariyachaokun; Khomson Suttisintong; Sanya Sureram; et al. (J. Chem. Inf. Model., 2022)

Bioisosteric Design Identifies Inhibitors of Mycobacterium tuberculosis DNA Gyrase ATPase Activity. - Bundit Kamsri; Bongkochawan Pakamwong; Paptawan Thongdee; Naruedon Phusi; Pharit Kamsri; Auradee Punkvang; Sombat Ketrat; Patchreenart Saparpakorn; Supa Hannongbua; Jidapa Sangswan; Khomson Suttisintong; Sanya Sureram; et al. (J. Chem. Inf. Model., 2023)

Enhancement by pyrazolones of colistin efficacy against mcr-1-expressing E. coli: an in silico and in vitro investigation. - Chonnikan Hanpaibool; Puey Ounjai; Sirilata Yotphan; Adrian J. Mulholland; James Spencer; Natharin Ngamwongsatit; Thanyada Rungrotmongkol (J. Comput. Aided Mol. Des., 2023)

Ligand-Based Virtual Screening for Discovery of Indole Derivatives as Potent DNA Gyrase ATPase Inhibitors Active against Mycobacterium tuberculosis and Hit Validation by Biological Assays. - Bongkochawan Pakamwong; Paptawan Thongdee; Bundit Kamsri; Naruedon Phusi; Somjintana Taveepanich; Kampanart Chayajarus; Pharit Kamsri; Auradee Punkvang; Supa Hannongbua; Jidapa Sangswan; Khomson Suttisintong; Sanya Sureram; et al. (J. Chem. Inf. Model., 2024)

Dynamic Behavior and Substrate Interactions of the Polymyxin Resistance Determinant MCR-1 Investigated by Molecular Dynamics Simulations in the Membrane Environment. - Emily Lythell; Jack Badley; Reynier Suardíaz; Catherine R. Gurr; Catherine L. Tooke; Philip Hinchliffe; A. Sofia F. Oliveira; Marc van der Kamp; James Spencer; Adrian J. Mulholland (J. Chem. Inf. Model., 2025)