An Agent Based Approach to Modelling Microbial Ecosystems. - James T. Murphy; Ray Walshe; Marc Devocelle (ERCIM News, 2008)

High-Performance Computing for Modelling Bacterial Communities. - James T. Murphy; Ray Walshe; Marc Devocelle (ERCIM News, 2008)

Computational Modelling and the Pro-Drug Approach to Treating Antibiotic-Resistant Bacteria. - James T. Murphy; Ray Walshe; Marc Devocelle (ERCIM News, 2010)

A Computational Modelling Approach to Explore the Anti-microbial Pro-drug Delivery System. - James T. Murphy; Ray Walshe; Marc Devocelle (BIOINFORMATICS, 2011)

A Theoretical Analysis of the Prodrug Delivery System for Treating Antibiotic-Resistant Bacteria. - James T. Murphy; Ray Walshe; Marc Devocelle (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

An Agent-Based Modelling Approach to Biological Invasion by Macroalgae in European Coastal Environments. - James T. Murphy; Mark P. Johnson; Frédérique Viard (ECCS, 2014)

Modelling Approaches to Inform the Control and Management of Invasive Seaweeds. - James T. Murphy; Mark P. Johnson; Frédérique Viard (ERCIM News, 2016)

Large benefits to youth-focused HIV treatment-as-prevention efforts in generalized heterosexual populations: An agent-based simulation model. - John E. Mittler; James T. Murphy; Sarah E. Stansfield; Kathryn Peebles; Geoffrey S. Gottlieb; Neil F. Abernethy; Molly C. Reid; Steven M. Goodreau; Joshua T. Herbeck (PLoS Comput. Biol., 2019)