MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. - Gemma L. Holliday; Daniel E. Almonacid; Gail J. Bartlett; Noel M. O'Boyle; James W. Torrance; Peter Murray-Rust; John B. O. Mitchell; Janet M. Thornton (Nucleic Acids Res., 2007)

gEVAL - a web-based browser for evaluating genome assemblies. - William Chow; Kim Brügger; Mario Cáccamo; Ian Sealy; James W. Torrance; Kerstin Howe (Bioinform., 2016)

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. - Marcela Uliano-Silva; João Gabriel R. N. Ferreira; Ksenia Krasheninnikova; Mark L. Blaxter; Nova Mieszkowska; Neil Hall; Peter Holland; Richard Durbin; Thomas Richards; Paul J. Kersey; Peter Hollingsworth; Willie Wilson; et al. (BMC Bioinform., 2023)