PartiGene-constructing partial genomes. - John Parkinson; Alasdair Anthony; James Wasmuth; Ralf Schmid; Ann Hedley; Mark L. Blaxter (Bioinform., 2004)

prot4EST: Translating Expressed Sequence Tags from neglected genomes. - James Wasmuth; Mark L. Blaxter (BMC Bioinform., 2004)

Exploring Parasite Gene Space. - James Wasmuth; Ralf Schmid; Alasdair Anthony; John Parkinson; Mark L. Blaxter (BMC Bioinform., 2005)

DETECT - a Density Estimation Tool for Enzyme ClassificaTion and its application to Plasmodium falciparum. - Stacy S. Hung; James Wasmuth; Christopher Sanford; John Parkinson (Bioinform., 2010)

Figmop: a profile HMM to identify genes and bypass troublesome gene models in draft genomes. - David M. Curran; John S. Gilleard; James Wasmuth (Bioinform., 2014)

Kablammo: an interactive, web-based BLAST results visualizer. - Jeff A. Wintersinger; James D. Wasmuth (Bioinform., 2015)

Improved enzyme annotation with EC-specific cutoffs using DETECT v2. - Nirvana Nursimulu; Leon L. Xu; James D. Wasmuth; Ivan Krukov; John Parkinson (Bioinform., 2018)