boomBox. - Jamie Allen (NIME, 2005)

Predicting gene co-expression from CIS-regulatory regions. - Jamie Allen; Mark Shirley; Steve Rushton; Ajay Kohli; Ehsan Mesbahi (BMC Syst. Biol., 2007)

An ecology of practice: chiptune marching band. - Jamie Allen; Areti Galani; Kazuhiro Jo (Creativity & Cognition, 2009)

Chiptune marching band: a public workshop and performance. - Kazuhiro Jo; Jamie Allen; Areti Galani (Creativity & Cognition, 2009)

Human potential (movement). - Jamie Allen (SIGGRAPH ASIA Art Gallery & Emerging Technologies, 2009)

Chiptune Marching Band: presented simultaneously in Japanese and English. - Kazuhiro Jo; Jamie Allen (SIGGRAPH ASIA Courses, 2009)

Creative ecologies in action: technology and the workshop-as-artwork. - Jamie Allen; Rachel Clarke 001; Areti Galani; Kamila Wajda (Creativity & Cognition, 2011)

Walkthrough research: methodological potentials for head-mounted cameras as reflexive tools in museum contexts. - Jamie Allen; Christopher Whitehead; Dionísio Soares Paiva; Jakob Bak; Catherine Descure (UbiComp Adjunct, 2014)

Manual Manuals: Media Reflexivity in Reading Through Tangible Artifacts. - Jamie Allen (TEI, 2015)

VEXOR: an integrative environment for prioritization of functional variants in fine-mapping analysis. - Audrey Lemaçon; Charles Joly Beauparlant; Penny Soucy; Jamie Allen; Douglas F. Easton; Peter Kraft; Jacques Simard; Arnaud Droit (Bioinform., 2017)

Ensembl 2020. - Andrew D. Yates; Premanand Achuthan; Wasiu A. Akanni; James E. Allen; Jamie Allen; Jorge Álvarez-Jarreta; M. Ridwan Amode; Irina M. Armean; Andrey G. Azov; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; et al. (Nucleic Acids Res., 2020)

Ensembl 2021. - Kevin L. Howe; Premanand Achuthan; James E. Allen; Jamie Allen; Jorge Álvarez-Jarreta; M. Ridwan Amode; Irina M. Armean; Andrey G. Azov; Ruth Bennett; Jyothish Bhai; Konstantinos Billis; Sanjay Boddu; et al. (Nucleic Acids Res., 2021)

Ensembl 2022. - Fiona Cunningham; James E. Allen; Jamie Allen; Jorge Álvarez-Jarreta; M. Ridwan Amode; Irina M. Armean; Olanrewaju Austine-Orimoloye; Andrey G. Azov; If Barnes; Ruth Bennett; Andrew E. Berry; Jyothish Bhai; et al. (Nucleic Acids Res., 2022)

Ensembl 2023. - Fergal J. Martin; M. Ridwan Amode; Alisha Aneja; Olanrewaju Austine-Orimoloye; Andrey G. Azov; If Barnes; Arne Becker; Ruth Bennett; Andrew E. Berry; Jyothish Bhai; Simarpreet Kaur Bhurji; Alexandra Bignell; et al. (Nucleic Acids Res., 2023)

Sunk Cost: The Saga of the Felicity Ace. - Jamie Allen; Matthew J. Lutz; Delfina Fantini van Ditmar; Chris Woebken; Louise Carver (Conference on Designing Interactive Systems (Companion Volume), 2025)