The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. - Jamie J. Cannone; Sankar Subramanian; Murray N. Schnare; James R. Collett; Lisa M. D'Souza; Yushi Du; Brian Feng; Nan Lin; Lakshmi V. Madabusi; Kirsten M. Müller; Nupur Pande; Zhidi Shang; et al. (BMC Bioinform., 2002)

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction. - Jamie J. Cannone; Sankar Subramanian; Murray N. Schnare; James R. Collett; Lisa M. D'Souza; Yushi Du; Brian Feng; Nan Lin; Lakshmi V. Madabusi; Kirsten M. Müller; Nupur Pande; Zhidi Shang; et al. (BMC Bioinform., 2002)

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction. - Kishore J. Doshi; Jamie J. Cannone; Christian W. Cobaugh; Robin Ray Gutell (BMC Bioinform., 2004)

RNA2DMap: A Visual Exploration Tool of the Information in RNA's Higher-Order Structure. - Weijia Xu; Ame Wongsa; Jung Lee; Lei Shang; Jamie J. Cannone; Robin Ray Gutell (BIBM, 2011)

An accurate scalable template-based alignment algorithm. - David P. Gardner; Weijia Xu; Daniel P. Miranker; Stuart Ozer; Jamie J. Cannone; Robin Ray Gutell (BIBM, 2012)

Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems. - Lei Shang; David P. Gardner; Weijia Xu; Jamie J. Cannone; Daniel P. Miranker; Stuart Ozer; Robin Ray Gutell (BMC Syst. Biol., 2013)

R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server. - Jamie J. Cannone; Blake A. Sweeney; Anton I. Petrov; Robin Ray Gutell; Craig L. Zirbel; Neocles Leontis (Nucleic Acids Res., 2015)

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. - Blake A. Sweeney; Anton I. Petrov; Carlos Eduardo Ribas; Robert D. Finn; Alex Bateman; Maciej Szymanski; Wojciech M. Karlowski; Stefan E. Seemann; Jan Gorodkin; Jamie J. Cannone; Robin Ray Gutell; Simon Kay; et al. (Nucleic Acids Res., 2021)