Evolutionary tree genetic programming. - Ján Antolík; William H. Hsu (GECCO, 2005)

Automatic Annotation of Medical Records. - Ján Antolík (MIE, 2005)

Development of Maps of Simple and Complex Cells in the Primary Visual Cortex. - Ján Antolík; James A. Bednar (Frontiers Comput. Neurosci., 2011)

Integrated workflows for spiking neuronal network simulations. - Ján Antolík; Andrew P. Davison (Frontiers Neuroinformatics, 2013)

Model Constrained by Visual Hierarchy Improves Prediction of Neural Responses to Natural Scenes. - Ján Antolík; Sonja B. Hofer; James A. Bednar; Thomas D. Mrsic-Flogel (PLoS Comput. Biol., 2016)

Arkheia: Data Management and Communication for Open Computational Neuroscience. - Ján Antolík; Andrew P. Davison (Frontiers Neuroinformatics, 2018)

Learning invariance manifolds of visual sensory neurons. - Luca Baroni; Mohammad Bashiri; Konstantin F. Willeke; Ján Antolík; Fabian H. Sinz (NeurReps, 2022)

A comprehensive data-driven model of cat primary visual cortex. - Ján Antolík; Rémy Cagnol; Tibor Rózsa; Cyril Monier; Yves Frégnac; Andrew P. Davison (PLoS Comput. Biol., 2024)

Learning and aligning single-neuron invariance manifolds in visual cortex. - Mohammad Bashiri; Luca Baroni; Ján Antolík; Fabian H. Sinz (ICLR, 2025)