Co-occurrence analysis of insertional mutagenesis data reveals cooperating oncogenes. - Jeroen de Ridder; Jaap Kool; Anthony Uren; Jan Bot; Lodewyk F. A. Wessels; Marcel J. T. Reinders (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Inferring combinatorial association logic networks in multimodal genome-wide screens. - Jeroen de Ridder; Alice Gerrits; Jan Bot; Gerald de Haan; Marcel J. T. Reinders; Lodewyk F. A. Wessels (Bioinform., 2010)

Identification of Networks of Co-Occurring, Tumor-Related DNA Copy Number Changes Using a Genome-Wide Scoring Approach. - Christiaan Klijn; Jan Bot; David J. Adams; Marcel J. T. Reinders; Lodewyk F. A. Wessels; Jos Jonkers (PLoS Comput. Biol., 2010)

CytoscapeRPC: a plugin to create, modify and query Cytoscape networks from scripting languages. - Jan Bot; Marcel J. T. Reinders (Bioinform., 2011)

Enabling large genomic data transfers using nation-wide and international dynamic lightpaths. - Jan Bot; Migiel de Vos; Sander Boele; Marcel J. T. Reinders; Joost N. Kok (eScience, 2012)

Ibidas: Querying Flexible Data Structures to Explore Heterogeneous Bioinformatics Data. - Marc Hulsman; Jan Bot; Arjen P. de Vries; Marcel J. T. Reinders (DILS, 2013)

Mutational Genomics for Cancer Pathway Discovery. - Jeroen de Ridder; Jaap Kool; Anthony Uren; Jan Bot; Johann de Jong; Alistair G. Rust; Anton Berns; Maarten van Lohuizen; David J. Adams; Lodewyk F. A. Wessels; Marcel J. T. Reinders (PRIB, 2013)