Statistical learning for detecting protein-DNA-binding sites. - Thomas Martinetz; Jan E. Gewehr; Jan T. Kim (IJCNN, 2003)

Combining Secondary Structure Element Alignment and Profile-Profile Alignment for Fold Recognition. - Jan E. Gewehr; Niklas von Öhsen; Ralf Zimmer (German Conference on Bioinformatics, 2004)

Binding Matrix: a Novel Approach for Binding Site Recognition. - Jan T. Kim; Jan E. Gewehr; Thomas Martinetz (J. Bioinform. Comput. Biol., 2004)

QUASAR - scoring and ranking of sequence-structure alignments. - Fabian Birzele; Jan E. Gewehr; Ralf Zimmer (Bioinform., 2005)

SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles. - Jan E. Gewehr; Ralf Zimmer (Bioinform., 2006)

Vorolign - fast structural alignment using Voronoi contacts. - Fabian Birzele; Jan E. Gewehr; Gergely Csaba; Ralf Zimmer (Bioinform., 2007)

AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings. - Jan E. Gewehr; Volker Hintermair; Ralf Zimmer (Bioinform., 2007)

BioWeka - extending the Weka framework for bioinformatics. - Jan E. Gewehr; Martin Szugat; Ralf Zimmer (Bioinform., 2007)

AutoPSI: a database for automatic structural classification of protein sequences and structures. - Fabian Birzele; Jan E. Gewehr; Ralf Zimmer (Nucleic Acids Res., 2008)

Towards a Medication Core Data Set for the Medical Informatics Initiative (MII): Initial Mapping Experience between the German Procedure Classification (OPS) and the Identification of Medicinal Products (IDMP). - Susanne Zabka; Danny Ammon; Thomas Ganslandt; Jan E. Gewehr; Christian Haverkamp; Saskia Kiefer; Heinrich Lautenbacher; Matthias Löbe; Sylvia Thun; Martin Boeker (JOWO, 2019)

Integrating Heterogeneous Data Sources for Cross-Institutional Data Sharing: Requirements Elicitation and Management in SMITH. - Kais Tahar; Christoph Müller; Andreas Dürschmid; Silke Haferkamp; Kutaiba Saleh; Patrick Jürs; Sebastian Stäubert; Jan Erik Gewehr; Sven Zenker; Danny Ammon; Thomas Wendt (MedInfo, 2019)