New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis. - Julian Mattes; Johannes Fieres; Joël Beaudouin; Daniel Gerlich; Jan Ellenberg; Roland Eils (MICCAI, 2001)

Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells. - Nathalie Harder; Beate Neumann; Michael Held; Urban Liebel; Holger Erfle; Jan Ellenberg; Roland Eils; Karl Rohr (Bildverarbeitung für die Medizin, 2006)

Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens. - Vassili Kovalev; Nathalie Harder; Beate Neumann; Michael Held; Urban Liebel; Holger Erfle; Jan Ellenberg; Roland Eils; Karl Rohr (CVPR (1), 2006)

Automated recognition of mitotic patterns in fluorescence microscopy images of human cells. - Nathalie Harder; Beate Neumann; Michael Held; Urban Liebel; Holger Erfle; Jan Ellenberg; Roland Eils; Karl Rohr (ISBI, 2006)

Time-lapse microscopy-based genome wide RNAi screening in live human cells. - Beate Neumann; Michael Held; Urban Liebel; Holger Erfle; Phil Rogers; Rainer Pepperkok; Jan Ellenberg (ISBI, 2006)

Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences. - Nathalie Harder; Felipe Mora-Bermúdez; William J. Godinez; Jan Ellenberg; Roland Eils; Karl Rohr (MICCAI (1), 2006)

Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. - Nathalie Harder; Felipe Mora-Bermúdez; William J. Godinez; Jan Ellenberg; Roland Eils; Karl Rohr (ISBI, 2007)

Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences. - Il-Han Kim; William J. Godinez; Nathalie Harder; Felipe Mora-Bermúdez; Jan Ellenberg; Roland Eils; Karl Rohr (Image Processing, 2007)

A genome wide RNAI screen by time lapse microscopy in order to identify mitotic genes - computational aspects and challenges. - Thomas Walter 003; Michael Held; Beate Neumann; Jean-Karim Hériché; Christian Conrad; Rainer Pepperkok; Jan Ellenberg (ISBI, 2008)

Automatic Analysis of Live Cell Image Sequences to determine Temporal Mitotic Phenotypes. - Nathalie Harder; Felipe Mora-Bermúdez; William J. Godinez; Annelie Wünsche; Jan Ellenberg; Roland Eils; Karl Rohr (Bildverarbeitung für die Medizin, 2010)

Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay. - Grégoire Pau; Thomas Walter 003; Beate Neumann; Jean-Karim Hériché; Jan Ellenberg; Wolfgang Huber (BMC Bioinform., 2013)

FUN-L: gene prioritization for RNAi screens. - Jonathan G. Lees; Jean-Karim Hériché; Ian Morilla; José María Fernández 001; Priit Adler; Martin Krallinger; Jaak Vilo; Alfonso Valencia; Jan Ellenberg; Juan A. G. Ranea; Christine A. Orengo (Bioinform., 2015)

The cellular microscopy phenotype ontology. - Simon Jupp; James Malone; Tony Burdett; Jean-Karim Hériché; Eleanor Williams; Jan Ellenberg; Helen E. Parkinson; Gabriella Rustici (J. Biomed. Semant., 2016)

Experimental and computational framework for a dynamic protein atlas of human cell division. - Yin Cai; M. Julius Hossain; Jean-Karim Hériché; Antonio Z. Politi; Nike Walther; Birgit Koch; Malte Wachsmuth; Bianca Nijmeijer; Moritz Kueblbeck; Marina Martinic-Kavur; Rene Ladurner; Stephanie Alexander; et al. (Nat., 2018)

ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy. - Carl Barton; Sandro Morganella; Øyvind Ødegård-Fougner; Stephanie Alexander; Jonas Ries; Tomas W. Fitzgerald; Jan Ellenberg; Ewan Birney (PLoS Comput. Biol., 2018)

Simulating structurally variable nuclear pore complexes for microscopy. - Maria Theiss; Jean-Karim Hériché; Craig Russell; David Helekal; Alisdair Soppitt; Jonas Ries; Jan Ellenberg; Alvis Brazma; Virginie Uhlmann (Bioinform., 2023)