Red Queen Dynamics with Non-Standard Fitness Interactions. - Jan Engelstädter; Sebastian Bonhoeffer (PLoS Comput. Biol., 2009)

Mod/Resc Parsimony Inference. - Igor Nor; Danny Hermelin; Sylvain Charlat; Jan Engelstadter; Max Reuter; Olivier Duron; Marie-France Sagot (CPM, 2010)

Mod/Resc Parsimony Inference: Theory and application. - Igor Nor; Danny Hermelin; Sylvain Charlat; Jan Engelstadter; Max Reuter; Olivier Duron; Marie-France Sagot (Inf. Comput., 2012)

On Genetic Specificity in Symbiont-Mediated Host-Parasite Coevolution. - Marek Kwiatkowski; Jan Engelstädter; Christoph Vorburger (PLoS Comput. Biol., 2012)

The Effect of Bacterial Recombination on Adaptation on Fitness Landscapes with Limited Peak Accessibility. - Danesh Moradigaravand; Jan Engelstädter (PLoS Comput. Biol., 2012)