Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation. - Gundián M. de Hijas-Liste; Eva Balsa-Canto; Jan Ewald; Martin Bartl; Pu Li 001; Julio R. Banga; Christoph Kaleta (BMC Bioinform., 2015)

Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. - Jan Ewald; Martin Bartl; Thomas Dandekar; Christoph Kaleta (PLoS Comput. Biol., 2017)

Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis. - Jan Ewald; Flora Rivieccio; Lukás Radosa; Stefan Schuster; Axel A. Brakhage; Christoph Kaleta (PLoS Comput. Biol., 2021)

Federated Learning on Transcriptomic Data: Model Quality and Performance Trade-Offs. - Anika Hannemann; Jan Ewald; Leo Seeger; Erik Buchmann (ICCS (4), 2024)

Visible neural networks for multi-omics integration: a critical review. - David Antony Selby; Rashika Jakhmola; Maximilian Sprang; Gerrit Großmann; Hind Raki; Niloofar Maani; Daria Pavliuk; Jan Ewald; Sebastian J. Vollmer (Frontiers Artif. Intell., 2025)