Automated testing in APL - an application of exception handling. - Jan F. Prins (APL, 1982)

Monte Carlo techniques in code optimization. - Dean Jacobs; Jan F. Prins; Peter Siegel; Kenneth Wilson (MICRO, 1982)

A new notion of encapsulation. - David Gries; Jan F. Prins (SLIPE, 1985)

McLaren's Masterpiece. - David Gries; Jan F. Prins (Sci. Comput. Program., 1987)

Partial Implementations in Program Derivation. - Jan F. Prins (1987)

Integrating Non-Interfering Versions of Programs. - Susan Horwitz; Jan F. Prins; Thomas W. Reps (POPL, 1988)

On the Adequacy of Program Dependence Graphs for Representing Programs. - Susan Horwitz; Jan F. Prins; Thomas W. Reps (POPL, 1988)

Support for Integrating Program Variants in an Environment for Programming in the Large. - Thomas W. Reps; Susan Horwitz; Jan F. Prins (SCM, 1988)

Integrating Noninterfering Versions of Programs. - Susan Horwitz; Jan F. Prins; Thomas W. Reps (ACM Trans. Program. Lang. Syst., 1989)

Prototyping parallel and distributed programs in Proteus. - Peter Mills; Lars S. Nyland; Jan F. Prins; John H. Reif; Robert A. Wagner (SPDP, 1991)

Prototyping N-Body Simulation in Proteus. - Peter Mills; Lars S. Nyland; Jan F. Prins; John H. Reif (IPPS, 1992)

Implementations of Randomized Sorting on Large Parallel Machines. - William L. Hightower; Jan F. Prins; John H. Reif (SPAA, 1992)

Transforming High-Level Data-Parallel Programs into Vector Operations. - Jan F. Prins; Daniel W. Palmer (PPoPP, 1993)

Connected components algorithms for mesh-connected parallel computers. - Steve Goddard; Subodh Kumar; Jan F. Prins (Parallel Algorithms, 1994)

Specification and Development of Parallel Algorithms with the Proteus System. - Allen Goldberg; Peter Mills; Lars S. Nyland; Jan F. Prins; John H. Reif; James Riely (Specification of Parallel Algorithms, 1994)

Piecewise Execution of Nested Data-Parallel Programs. - Daniel W. Palmer; Jan F. Prins; Siddhartha Chatterjee; Rickard E. Faith (LCPC, 1995)

A Refinement Methodology for Developing Data-Parallel Applications. - Lars S. Nyland; Jan F. Prins; Allen Goldberg; Peter Mills; John H. Reif; Robert A. Wagner (Euro-Par, Vol. I, 1996)

KHEPERA: A System for Rapid Implementation of Domain Specific Languages. - Rickard E. Faith; Lars S. Nyland; Jan F. Prins (DSL, 1997)

Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques. - Lars S. Nyland; Jan F. Prins; Ru Huai Yun; Jan Hermans; Hye-Chung Kum; Lei Wang (J. Parallel Distributed Comput., 1997)

Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution. - Lars S. Nyland; Jan F. Prins; Ru Huai Yun; Jan Hermans; Hye-Chung Kum; Lei Wang (IRREGULAR, 1998)

Expressing Irregular Computations in Modern Fortran Dialects. - Jan F. Prins; Siddhartha Chatterjee; Martin Simons 001 (LCR, 1998)

A virtual environment for steered molecular dynamics. - Jan F. Prins; Jan Hermans; Geoffrey Mann; Lars S. Nyland; Martin Simons 001 (Future Gener. Comput. Syst., 1999)

Irregular computations in Fortran - expression and implementation strategies. - Jan F. Prins; Siddhartha Chatterjee; Martin Simons 001 (Sci. Program., 1999)

Flattening Is an Improvement. - James Riely; Jan F. Prins (SAS, 2000)

A Design Methodology for Data-Parallel Applications. - Lars S. Nyland; Jan F. Prins; Allen Goldberg; Peter Mills (IEEE Trans. Software Eng., 2000)

Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. - Jun Huan; Jan F. Prins; Wei Wang 010; Todd J. Vision (CSB, 2003)

Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism. - Jun Huan; Wei Wang 010; Jan F. Prins (ICDM, 2003)

Evaluating the Impact of Programming Language Features on the Performance of Parallel Applications on Cluster Architectures. - Konstantin Berlin; Jun Huan; Mary Jacob; Garima Kochhar; Jan F. Prins; William W. Pugh; P. Sadayappan; Jaime Spacco; Chau-Wen Tseng (LCPC, 2003)

SPIN: mining maximal frequent subgraphs from graph databases. - Jun Huan; Wei Wang 010; Jan F. Prins; Jiong Yang 001 (KDD, 2004)

Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. - Jun Huan; Wei Wang 010; Anglina Washington; Jan F. Prins; Ruchir Shah; Alexander Tropsha (Pacific Symposium on Biocomputing, 2004)

Mining protein family specific residue packing patterns from protein structure graphs. - Jun Huan; Wei Wang 010; Deepak Bandyopadhyay; Jack Snoeyink; Jan F. Prins; Alexander Tropsha (RECOMB, 2004)

Mining Approximate Frequent Itemsets from Noisy Data. - Jinze Liu; Susan Paulsen; Wei Wang 010; Andrew B. Nobel; Jan F. Prins (ICDM, 2005)

Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs. - Jun Huan; Deepak Bandyopadhyay; Wei Wang 010; Jack Snoeyink; Jan F. Prins; Alexander Tropsha (J. Comput. Biol., 2005)

Clustering pair-wise dissimilarity data into partially ordered sets. - Jinze Liu; Qi Zhang 025; Wei Wang 010; Leonard McMillan; Jan F. Prins (KDD, 2006)

UTS: An Unbalanced Tree Search Benchmark. - Stephen Olivier; Jun Huan; Jinze Liu; Jan F. Prins; James Dinan; P. Sadayappan; Chau-Wen Tseng (LCPC, 2006)

Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis. - Jinze Liu; Susan Paulsen; Xing Sun; Wei Wang 010; Andrew B. Nobel; Jan F. Prins (SDM, 2006)

Local Structure Comparison of Proteins. - Jun Huan; Jan F. Prins; Wei Wang 010 (Adv. Comput., 2006)

Dynamic Load Balancing of Unbalanced Computations Using Message Passing. - James Dinan; Stephen Olivier; Gerald Sabin; Jan F. Prins; P. Sadayappan; Chau-Wen Tseng (IPDPS, 2007)

Porting the GROMACS Molecular Dynamics Code to the Cell Processor. - Stephen Olivier; Jan F. Prins; Jeff Derby; Ken V. Vu (IPDPS, 2007)

PoClustering: Lossless Clustering of Dissimilarity Data. - Jinze Liu; Qi Zhang 025; Wei Wang 010; Leonard McMillan; Jan F. Prins (SDM, 2007)

Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. - Deepak Bandyopadhyay; Jun Huan; Jinze Liu; Jan F. Prins; Jack Snoeyink; Wei Wang 010; Alexander Tropsha (BIBM, 2008)

Scalable Dynamic Load Balancing Using UPC. - Stephen Olivier; Jan F. Prins (ICPP, 2008)

Genotype Sequence Segmentation: Handling Constraints and Noise. - Qi Zhang 025; Wei Wang 010; Leonard McMillan; Jan F. Prins; Fernando Pardo-Manuel de Villena; David Threadgill (WABI, 2008)

A message passing benchmark for unbalanced applications. - James Dinan; Stephen Olivier; Gerald Sabin; Jan F. Prins; P. Sadayappan; Chau-Wen Tseng (Simul. Model. Pract. Theory, 2008)

Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs. - Stephen Olivier; Jan F. Prins (IWOMP, 2009)

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. - Deepak Bandyopadhyay; Jun Huan; Jan F. Prins; Jack Snoeyink; Wei Wang 010; Alexander Tropsha (J. Comput. Aided Mol. Des., 2009)

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. - Deepak Bandyopadhyay; Jun Huan; Jan F. Prins; Jack Snoeyink; Wei Wang 010; Alexander Tropsha (J. Comput. Aided Mol. Des., 2009)

High Performance Computing with the Cell Broadband Engine. - Michael Gschwind; Fred G. Gustavson; Jan F. Prins (Sci. Program., 2009)

A probabilistic framework for aligning paired-end RNA-seq data. - Yin Hu; Kai Wang; Xiaping He; Derek Y. Chiang; Jan F. Prins; Jinze Liu (Bioinform., 2010)

Comparison of OpenMP 3.0 and Other Task Parallel Frameworks on Unbalanced Task Graphs. - Stephen Olivier; Jan F. Prins (Int. J. Parallel Program., 2010)

Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. - Deepak Bandyopadhyay; Jun Huan; Jinze Liu; Jan F. Prins; Jack Snoeyink; Wei Wang 010; Alexander Tropsha (IEEE Trans. Inf. Technol. Biomed., 2010)

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data. - Darshan Singh; Christian F. Orellana; Yin Hu; Corbin D. Jones; Yufeng Liu; Derek Y. Chiang; Jinze Liu; Jan F. Prins (Bioinform., 2011)

OpenMP task scheduling strategies for multicore NUMA systems. - Stephen Olivier; Allan Porterfield; Kyle B. Wheeler; Michael Spiegel; Jan F. Prins (Int. J. High Perform. Comput. Appl., 2012)

Dynamic Load Balancing of the Adaptive Fast Multipole Method in Heterogeneous Systems. - Robert E. Overman; Jan F. Prins; Laura A. Miller; Michael L. Minion (IPDPS Workshops, 2013)

Power Measurement and Concurrency Throttling for Energy Reduction in OpenMP Programs. - Allan Porterfield; Stephen L. Olivier; Sridutt Bhalachandra; Jan F. Prins (IPDPS Workshops, 2013)

A Robust Method for Transcript Quantification with RNA-Seq Data. - Yan Huang 006; Yin Hu; Corbin D. Jones; James N. MacLeod; Derek Y. Chiang; Yufeng Liu; Jan F. Prins; Jinze Liu (J. Comput. Biol., 2013)

Characterizing and mitigating work time inflation in task parallel programs. - Stephen L. Olivier; Bronis R. de Supinski; Martin Schulz 001; Jan F. Prins (Sci. Program., 2013)

Cache-aware asymptotically-optimal sampling-based motion planning. - Jeffrey Ichnowski; Jan F. Prins; Ron Alterovitz (ICRA, 2014)

Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems. - James E. McClure; Hao Wang 002; Jan F. Prins; Cass T. Miller; Wu-chun Feng (IPDPS, 2014)

A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU-GPU systems. - James E. McClure; Jan F. Prins; Cass T. Miller (Comput. Phys. Commun., 2014)

Using Dynamic Duty Cycle Modulation to Improve Energy Efficiency in High Performance Computing. - Sridutt Bhalachandra; Allan Porterfield; Jan F. Prins (IPDPS Workshops, 2015)

SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. - Joshua D. Welch; Ziqing Liu; Li Wang; Junjie Lu; Paul Lerou; Jeremy E. Purvis; Li Qian; Alexander J. Hartemink; Jan F. Prins (RECOMB, 2016)

Asynchronous In Situ Connected-Components Analysis for Complex Fluid flows. - James E. McClure; Mark A. Berrill; Jan F. Prins; Cass T. Miller (ISAV@SC, 2016)

Cloud-based Motion Plan Computation for Power-Constrained Robots. - Jeffrey Ichnowski; Jan F. Prins; Ron Alterovitz (WAFR, 2016)

Performance and Scalability Study of FMM Kernels on Novel Multi- and Many-core Architectures. - Antón Rey; Francisco D. Igual; Manuel Prieto-Matías; Jan F. Prins (ICCS, 2017)

An Adaptive Core-Specific Runtime for Energy Efficiency. - Sridutt Bhalachandra; Allan Porterfield; Stephen L. Olivier; Jan F. Prins (IPDPS, 2017)

The Economic Case for Cloud-Based Computation for Robot Motion Planning. - Jeffrey Ichnowski; Jan F. Prins; Ron Alterovitz (ISRR, 2017)

E Pluribus Unum: United States of Single Cells. - Joshua D. Welch; Alexander J. Hartemink; Jan F. Prins (RECOMB, 2017)

Improving Energy Efficiency in Memory-constrained Applications Using Core-specific Power Control. - Sridutt Bhalachandra; Allan Porterfield; Stephen L. Olivier; Jan F. Prins; Robert J. Fowler (E2SC@SC, 2017)