SMMP v. 3.0 - Simulating proteins and protein interactions in Python and Fortran. - Jan H. Meinke; Sandipan Mohanty; Frank Eisenmenger; Ulrich H. E. Hansmann (Comput. Phys. Commun., 2008)

Free-energy-driven folding and thermodynamics of the 67-residue protein GS-alpha3W - A large-scale Monte Carlo study. - Jan H. Meinke; Ulrich H. E. Hansmann (J. Comput. Chem., 2009)

Protein Folding with Python on Supercomputers. - Jan H. Meinke (SciPy, 2010)

GPUMAFIA: Efficient Subspace Clustering with MAFIA on GPUs. - Andrew V. Adinetz; Jiri Kraus; Jan H. Meinke; Dirk Pleiter (Euro-Par, 2013)

The Mont-Blanc Project: First Phase Successfully Finished. - Momme Allalen; David Brayford; Daniele Tafani; Volker Weinberg; Bernd Mohr; Dirk Brömmel; Rene Halver; Jan H. Meinke; Sandipan Mohanty (CoRR, 2015)

The mont-blanc prototype: an alternative approach for HPC systems. - Nikola Rajovic; Alejandro Rico; Filippo Mantovani; Daniel Ruiz 003; Josep Oriol Vilarrubi; Constantino Gómez; Luna Backes; Diego Nieto; Harald Servat; Xavier Martorell; Jesús Labarta; Eduard Ayguadé; et al. (SC, 2016)

Examining Performance Portability with Kokkos for an Ewald Sum Coulomb Solver. - Rene Halver; Jan H. Meinke; Godehard Sutmann (PPAM (2), 2019)

Kokkos implementation of an Ewald Coulomb solver and analysis of performance portability. - Rene Halver; Jan H. Meinke; Godehard Sutmann (J. Parallel Distributed Comput., 2020)

Assessing the Performance of Portable Programming Models Across GPU Vendors for the N-Body Problem. - Rodrigo A. C. Bartolomeu; René Halver; Jan H. Meinke; Godehard Sutmann (PPAM (2), 2024)

Application-Driven Exascale: The JUPITER Benchmark Suite. - Andreas Herten; Sebastian Achilles; Damian Alvarez; Jayesh Badwaik; Eric Behle; Mathis Bode; Thomas Breuer; Daniel Caviedes-Voullième; Mehdi Cherti; Adel Dabah; Salem El Sayed; Wolfgang Frings; et al. (SC, 2024)

Effect of implementations of the N-body problem on the performance and portability across GPU vendors. - Rodrigo A. C. Bartolomeu; René Halver; Jan H. Meinke; Godehard Sutmann (Future Gener. Comput. Syst., 2025)

Experience and analysis of scalable high-fidelity computational fluid dynamics on modular supercomputing architectures. - Martin Karp; Estela Suarez; Jan H. Meinke; Måns I. Andersson; Philipp Schlatter; Stefano Markidis; Niclas Jansson (Int. J. High Perform. Comput. Appl., 2025)