Steady-state modelling of metabolic pathways: a guide for the prospective simulator. - Jan-Hendrik S. Hofmeyr (Comput. Appl. Biosci., 1986)

METAMOD: software for steady-state modelling and control analysis of metabolic pathways on the BBC microcomputer. - Jan-Hendrik S. Hofmeyr; K. J. van der Merwe (Comput. Appl. Biosci., 1986)

MetaModel: a program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles. - Athel Cornish-Bowden; Jan-Hendrik S. Hofmeyr (Comput. Appl. Biosci., 1991)

The reversible Hill equation: how to incorporate cooperative enzymes into metabolic models. - Jan-Hendrik S. Hofmeyr; Athel Cornish-Bowden (Comput. Appl. Biosci., 1997)

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. - Michael Hucka; Andrew Finney; Herbert M. Sauro; H. Bolouri; John C. Doyle 001; Hiroaki Kitano; Adam P. Arkin; Benjamin J. Bornstein; Dennis Bray; Athel Cornish-Bowden; Autumn A. Cuellar; Serge Dronov; et al. (Bioinform., 2003)

Modelling cellular systems with PySCeS. - Brett G. Olivier; Johann M. Rohwer; Jan-Hendrik S. Hofmeyr (Bioinform., 2005)

Ein Beitrag zu einer Theorie lebender Zellen (A Contribution towards a Theory of Living Cells). - Olaf Wolkenhauer; Jan-Hendrik S. Hofmeyr (Autom., 2008)

The logic of kinetic regulation in the thioredoxin system. - Ché S. Pillay; Jan-Hendrik S. Hofmeyr; Johann M. Rohwer (BMC Syst. Biol., 2011)

Tracing regulatory routes in metabolism using generalised supply-demand analysis. - Carl D. Christensen; Jan-Hendrik S. Hofmeyr; Johann M. Rohwer (BMC Syst. Biol., 2015)

PySCeSToolbox: a collection of metabolic pathway analysis tools. - Carl D. Christensen; Jan-Hendrik S. Hofmeyr; Johann M. Rohwer (Bioinform., 2018)

The first Special Issue on code biology - A bird's-eye view. - Jan-Hendrik S. Hofmeyr (Biosyst., 2018)

Causation, constructors and codes. - Jan-Hendrik S. Hofmeyr (Biosyst., 2018)

The Second Special Issue on Code Biology - An overview. - Jan-Hendrik S. Hofmeyr (Biosyst., 2020)

Kinetic modelling of compartmentalised reaction networks. - Jan-Hendrik S. Hofmeyr (Biosyst., 2020)

A biochemically-realisable relational model of the self-manufacturing cell. - Jan-Hendrik S. Hofmeyr (Biosyst., 2021)