Extended spectral subtraction. - Pavel Sovka; Petr Pollák; Jan Kybic (EUSIPCO, 1996)

Compensation of Unidirectional Geometric Distortion in EPI Using Spline Warping. - Jan Kybic; Philippe Thévenaz; Michael Unser (ICIP (2), 1999)

Multidimensional Elastic Registration of Images Using Splines. - Jan Kybic; Michael Unser (ICIP, 2000)

Unwarping of Unidirectionally Distorted EPI Images. - Jan Kybic; Philippe Thévenaz; Arto Nirkko; Michael Unser (IEEE Trans. Medical Imaging, 2000)

Cardiac Motion Analysis from Ultrasound Sequences Using Non-rigid Registration. - María J. Ledesma-Carbayo; Jan Kybic; Manuel Desco; Andrés Santos; Michael Unser (MICCAI, 2001)

Variational approach to tomographic reconstruction. - Jan Kybic; Thierry Blu; Michael A. Unser (Image Processing, 2001)

The fast multipole method for the direct E/MEG problem. - Maureen Clerc; Olivier D. Faugeras; Renaud Keriven; Jan Kybic; Théodore Papadopoulo (ISBI, 2002)

Cardiac ultrasound motion detection by elastic registration exploiting temporal coherence. - María J. Ledesma-Carbayo; Jan Kybic; Michael Sühling; Patrick R. Hunziker; Manuel Desco; Andrés Santos; Michael Unser (ISBI, 2002)

Generalized sampling: a variational approach .I. Theory. - Jan Kybic; Thierry Blu; Michael Unser (IEEE Trans. Signal Process., 2002)

Generalized sampling: a variational approach .II. Applications. - Jan Kybic; Thierry Blu; Michael Unser (IEEE Trans. Signal Process., 2002)

Symmetric BEM Formulation for the M/EEG Forward Problem. - Geoffray Adde; Maureen Clerc; Olivier D. Faugeras; Renaud Keriven; Jan Kybic; Théodore Papadopoulo (IPMI, 2003)

Fast parametric elastic image registration. - Jan Kybic; Michael Unser (IEEE Trans. Image Process., 2003)

High-dimensional mutual information estimation for image registration. - Jan Kybic (ICIP, 2004)

Quantitative analysis of microarray images. - Leila Muresan; Bettina Heise; Erich-Peter Klement; Jan Kybic (ICIP (2), 2005)

Computational Elastography from Standard Ultrasound Image Sequences by Global Trust Region Optimization. - Jan Kybic; Daniel Smutek (IPMI, 2005)

A common formalism for the Integral formulations of the forward EEG problem. - Jan Kybic; Maureen Clerc; Touffic Abboud; Olivier D. Faugeras; Renaud Keriven; Théodore Papadopoulo (IEEE Trans. Medical Imaging, 2005)

Spatio-temporal nonrigid registration for ultrasound cardiac motion estimation. - María J. Ledesma-Carbayo; Jan Kybic; Manuel Desco; Andrés Santos; Michael Sühling; Patrick R. Hunziker; Michael Unser (IEEE Trans. Medical Imaging, 2005)

Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. - Ignacio Arganda-Carreras; Carlos Oscar Sánchez Sorzano; Roberto Marabini; José María Carazo; Carlos Ortiz-de-Solorzano; Jan Kybic (CVAMIA, 2006)

Image Registration Accuracy Estimation Without Ground Truth Using Bootstrap. - Jan Kybic; Daniel Smutek (CVAMIA, 2006)

Incremental Updating of Nearest Neighbor-Based High-Dimensional Entropy Estimation. - Jan Kybic (ICASSP (3), 2006)

High-Dimensional Entropy Estimation for Finite Accuracy Data: R-NN Entropy Estimator. - Jan Kybic (IPMI, 2007)

Automatic two-step detection of pulmonary nodules. - Martin Dolejsi; Jan Kybic (Computer-Aided Diagnosis, 2007)

Automatic landmark detection for cervical image registration validation. - Juan D. García-Arteaga; Jan Kybic (Computer-Aided Diagnosis, 2007)

Continuous criterion for parallel MRI reconstruction using B-spline approximation (PROBER). - Jan Petr; Jan Kybic (Image Processing, 2007)

Geometric and information constraints for automatic landmark selection in colposcopy sequences. - Juan D. García-Arteaga; Jan Kybic; Jia Gu; Wenjing Li (VISAPP (1), 2007)

Regional image similarity criteria based on the Kozachenko-Leonenko entropy estimator. - Juan D. García-Arteaga; Jan Kybic (CVPR Workshops, 2008)

Reducing false positive responses in lung nodule detector system by asymmetric adaboost. - Martin Dolejsi; Jan Kybic; Stanislav Tuma; Michal Polovincak (ISBI, 2008)

Fast no ground truth image registration accuracy evaluation: Comparison of bootstrap and Hessian approaches. - Jan Kybic (ISBI, 2008)

Multi-resolution parallel integral projection for fast localization of a straight electrode in 3D ultrasound images. - Marian Uhercik; Jan Kybic; Hervé Liebgott; Christian Cachard (ISBI, 2008)

Three-dimensional segmentation of bones from CT and MRI using fast level sets. - Jakub Kratky; Jan Kybic (Image Processing, 2008)

2-D Locally Regularized Tissue Strain Estimation From Radio-Frequency Ultrasound Images: Theoretical Developments and Results on Experimental Data. - Elisabeth Brusseau; Jan Kybic; Jean-François Deprez; Olivier Basset (IEEE Trans. Medical Imaging, 2008)

Discrete curvature calculation for fast level set segmentation. - Jan Kybic; Jakub Kratky (ICIP, 2009)

The Lung TIME: annotated lung nodule dataset and nodule detection framework. - Martin Dolejsi; Jan Kybic; Michal Polovincak; Stanislav Tuma (Computer-Aided Diagnosis, 2009)

Respiratory Motion Estimation from Cone-Beam Projections Using a Prior Model. - Jef Vandemeulebroucke; Jan Kybic; Patrick Clarysse; David Sarrut (MICCAI (1), 2009)

Model Fitting Using RANSAC for Surgical Tool Localization in 3-D Ultrasound Images. - Marian Uhercik; Jan Kybic; Hervé Liebgott; Christian Cachard (IEEE Trans. Biomed. Eng., 2010)

Bootstrap Resampling for Image Registration Uncertainty Estimation Without Ground Truth. - Jan Kybic (IEEE Trans. Image Process., 2010)

Automatic colposcopy video tissue classification using higher order entropy-based image registration. - Juan D. García-Arteaga; Jan Kybic; Wenjing Li (Comput. Biol. Medicine, 2011)

Bootstrap optical flow confidence and uncertainty measure. - Jan Kybic; Claudia Nieuwenhuis (Comput. Vis. Image Underst., 2011)

Robust non-rigid registration of 2D and 3D graphs. - Eduard Serradell; Przemyslaw Glowacki; Jan Kybic; Francesc Moreno-Noguer; Pascal Fua (CVPR, 2012)

A multi-frequency approach to increase the native resolution of ultrasound images. - François Varray; Christian Cachard; Jan Kybic; Anthony Novell; Ayache Bouakaz; Olivier Basset (EUSIPCO, 2012)

Robust elastic 2D/3D geometric graph matching. - Eduard Serradell; Jan Kybic; Francesc Moreno-Noguer; Pascal Fua (Image Processing, 2012)

Approximate all nearest neighbor search for high dimensional entropy estimation for image registration. - Jan Kybic; Ivan Vnucko (Signal Process., 2012)

Active Testing Search for Point Cloud Matching. - Miguel Amável Pinheiro; Raphael Sznitman; Eduard Serradell; Jan Kybic; Francesc Moreno-Noguer; Pascal Fua (IPMI, 2013)

Registration of multiple stained histological sections. - Jirí Borovec; Jan Kybic; Michael Busta; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia (ISBI, 2013)

Line filtering for surgical tool localization in 3D ultrasound images. - Marian Uhercik; Jan Kybic; Yue Zhao 002; Christian Cachard; Hervé Liebgott (Comput. Biol. Medicine, 2013)

Reconstructing Evolving Tree Structures in Time Lapse Sequences. - Przemyslaw Glowacki; Miguel Amável Pinheiro; Engin Türetken; Raphael Sznitman; Daniel Lebrecht; Jan Kybic; Anthony Holtmaat; Pascal Fua (CVPR, 2014)

Path Descriptors for Geometric Graph Matching and Registration. - Miguel Amável Pinheiro; Jan Kybic (ICIAR (1), 2014)

Automatic simultaneous segmentation and fast registration of histological images. - Jan Kybic; Jirí Borovec (ISBI, 2014)

Neuromuscular fiber segmentation through particle filtering and discrete optimization. - Thomas Dietenbeck; François Varray; Jan Kybic; Olivier Basset; Christian Cachard (Image Processing, 2014)

Registration of segmented histological images using thin plate splines and belief propagation. - Jan Kybic (Image Processing, 2014)

Classification of microscopy images of Langerhans islets. - Jan Svihlík; Jan Kybic; David Habart; Zuzana Berková; Peter Girman; Jan Kríz; Klára Zacharovová (Image Processing, 2014)

Organ-focused mutual information for nonrigid multimodal registration of liver CT and Gd-EOB-DTPA-enhanced MRI. - Laura Fernandez-de-Manuel; Gert Wollny; Jan Kybic; Daniel Jimenez-Carretero; Jose M. Tellado; Enrique Ramon; Manuel Desco; Andrés Santos; Javier Pascau; María J. Ledesma-Carbayo (Medical Image Anal., 2014)

Fast registration of segmented images by normal sampling. - Jan Kybic; Martin Dolejsi; Jirí Borovec (CVPR Workshops, 2015)

Automatic detection of bone marrow infiltration by multiple myeloma detection in low-dose CT. - Francisco Martinez-Martinez; Jan Kybic; Lukás Lambert (ICIP, 2015)

Supertexton-based segmentation in early Drosophila oogenesis. - Rodrigo Nava; Jan Kybic (ICIP, 2015)

Geometrical graph matching using Monte Carlo tree search. - Miguel Amável Pinheiro; Jan Kybic (ICIP, 2015)

Classification of Tumor Epithelium and Stroma in Colorectal Cancer Based on Discrete Tchebichef Moments. - Rodrigo Nava; Germán González; Jan Kybic; Boris Escalante-Ramírez (CLIP@MICCAI, 2015)

Non-Rigid Graph Registration Using Active Testing Search. - Eduard Serradell; Miguel Amável Pinheiro; Raphael Sznitman; Jan Kybic; Francesc Moreno-Noguer; Pascal Fua (IEEE Trans. Pattern Anal. Mach. Intell., 2015)

Binary Pattern Dictionary Learning for Gene Expression Representation in Drosophila Imaginal Discs. - Jirí Borovec; Jan Kybic (ACCV Workshops (2), 2016)

Langerhans Islet Volume Estimation from 3D Optical Projection Tomography. - Jan Svihlík; Jan Kybic; David Habart; Hanna Hlushak; Jirí Dvorák; Barbora Radochová (ACCV Workshops (2), 2016)

Characterization of hematologic malignancies based on discrete orthogonal moments. - Rodrigo Nava; Germán González; Jan Kybic; Boris Escalante-Ramírez (IPTA, 2016)

Comparison of volume estimation methods for pancreatic islet cells. - Jirí Dvorák; Jan Svihlík; David Habart; Jan Kybic (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Automated separation of merged Langerhans islets. - Jan Svihlík; Jan Kybic; David Habart (Image Processing, 2016)

Fully automated classification of bone marrow infiltration in low-dose CT of patients with multiple myeloma based on probabilistic density model and supervised learning. - Francisco Martinez-Martinez; Jan Kybic; Lukás Lambert; Zuzana Mecková (Comput. Biol. Medicine, 2016)

Detection and Localization of Drosophila Egg Chambers in Microscopy Images. - Jirí Borovec; Jan Kybic; Rodrigo Nava (MLMI@MICCAI, 2017)

Left ventricle Hermite-based segmentation. - Jimena Olveres; Rodrigo Nava; Boris Escalante-Ramírez; Enrique Vallejo 002; Jan Kybic (Comput. Biol. Medicine, 2017)

Region growing using superpixels with learned shape prior. - Jirí Borovec; Jan Kybic; Akihiro Sugimoto (J. Electronic Imaging, 2017)

Supervised and unsupervised segmentation using superpixels, model estimation, and graph cut. - Jirí Borovec; Jan Svihlík; Jan Kybic; David Habart (J. Electronic Imaging, 2017)

Geometric Graph Matching Using Monte Carlo Tree Search. - Miguel Amável Pinheiro; Jan Kybic; Pascal Fua (IEEE Trans. Pattern Anal. Mach. Intell., 2017)

Benchmarking of Image Registration Methods for Differently Stained Histological Slides. - Jirí Borovec; Arrate Muñoz-Barrutia; Jan Kybic (ICIP, 2018)

Incremental B-spline deformation model for geometric graph matching. - Miguel Amável Pinheiro; Jan Kybic (ISBI, 2018)

Fast Registration by Boundary Sampling and Linear Programming. - Jan Kybic; Jirí Borovec (MICCAI (1), 2018)

Detecting multiple myeloma via generalized multiple-instance learning. - Jan Hering; Jan Kybic; Lukás Lambert (Image Processing, 2018)

Reconstructing Evolving Tree Structures in Time Lapse Sequences by Enforcing Time-Consistency. - Przemyslaw Glowacki; Miguel Amável Pinheiro; Agata Mosinska; Engin Türetken; Daniel Lebrecht; Raphael Sznitman; Anthony Holtmaat; Jan Kybic; Pascal Fua (IEEE Trans. Pattern Anal. Mach. Intell., 2018)

Generalized Multiple Instance Learning for Cancer Detection in Digital Histopathology. - Jan Hering; Jan Kybic (ICIAR (2), 2020)

Multiple Instance Learning Via Deep Hierarchical Exploration for Histology Image Classification. - Jan Hering; Jan Kybic (ISBI, 2020)

ANHIR: Automatic Non-Rigid Histological Image Registration Challenge. - Jirí Borovec; Jan Kybic; Ignacio Arganda-Carreras; Dmitry V. Sorokin; Gloria Bueno; Alexander V. Khvostikov; Spyridon Bakas; Eric I-Chao Chang; Stefan Heldmann; Kimmo Kartasalo; Leena Latonen; Johannes Lotz 002; et al. (IEEE Trans. Medical Imaging, 2020)

Potential Biomarkers From Positive Definite 4th Order Tensors In Hardi. - Sumit Kaushik; Jan Kybic; Avinash Bansal; Temesgen Bihonegn; Jan Slovak (ISBI, 2021)

Automatic evaluation of human oocyte developmental potential from microscopy images. - Denis Barucic; Jan Kybic; Olga Teplá; Zinovij Topurko; Irena Kratochvílová (CoRR, 2021)

Fast Learning from Label Proportions with Small Bags. - Denis Barucic; Jan Kybic (ICIP, 2022)

Learning to Segment from Object Sizes. - Denis Barucic; Jan Kybic (ITAT, 2022)

Learning to segment cell nuclei in phase-contrast microscopy from fluorescence images for drug discovery. - Hana Mertanová; Jan Kybic; Jarmila Stanková; Petr Dzubák; Marián Hajdúch (Image Processing, 2022)

Characterization of drug effects on cell cultures from phase-contrast microscopy images. - Denis Barucic; Sumit Kaushik; Jan Kybic; Jarmila Stanková; Petr Dzubák; Marián Hajdúch (Comput. Biol. Medicine, 2022)

Biomedical image analysis competitions: The state of current participation practice. - Matthias Eisenmann; Annika Reinke; Vivienn Weru; Minu Dietlinde Tizabi; Fabian Isensee; Tim J. Adler; Patrick Godau; Veronika Cheplygina; Michal Kozubek 001; Sharib Ali; Anubha Gupta; Jan Kybic; et al. (CoRR, 2022)

Learning to Segment From Object Thickness Annotations. - Denis Barucic; Jan Kybic (ISBI, 2023)

Atherosclerotic Plaque Stability Prediction from Longitudinal Ultrasound Images. - Jan Kybic; David Pakizer; Jirí Kozel; Patricie Michalcová; Frantisek Charvát; David Skoloudík (MLMI@MICCAI (1), 2024)