Using a Classifier System to Improve Dynamic Load Balancing. - Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo (ICPP Workshops, 2001)

An FPGA-Based Accelerator for Multiple Biological Sequence Alignment with DIALIGN. - Azzedine Boukerche; Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi; Adson Ferreira da Rocha (HiPC, 2007)

Reconfigurable Architecture for Biological Sequence Comparison in Reduced Memory Space. - Azzedine Boukerche; Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi; Adson Ferreira da Rocha (IPDPS, 2007)

FPGA architectures for biological sequence comparison in linear space. - Jan Mendonca Correa (2008)

Multiple Biological Sequence Alignment with a Parallel Island Injection Genetic Algorithm. - Lidia A. Miranda; Marcos F. Caetano; Alba Cristina Magalhaes Alves de Melo; Jan Mendonca Correa; Jacir Luiz Bordim (HPCC, 2010)

A Hardware Accelerator for the Fast Retrieval of DIALIGN Biological Sequence Alignments in Linear Space. - Azzedine Boukerche; Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi (IEEE Trans. Computers, 2010)

A fragment based alignment in linear space. - Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi; Azzedine Boukerche (BIBM Workshops, 2011)

Parallel Simulated Annealing for Fragment Based Sequence Alignment. - Jan Mendonca Correa; Alba Cristina Magalhaes Alves de Melo; Ricardo P. Jacobi; Azzedine Boukerche (IPDPS Workshops, 2012)

Gigabyte-scale alignment of biological sequences: A case study of IO bandwidth reconfiguration for FPGA acceleration. - Theepan Moorthy; Jan Mendonca Correa; Sathish Gopalakrishnan (CCECE, 2013)