Bioinformatics: tools for analysis of biological sequences. - Jan Paces (Stringology, 2001)

HERVd: database of human endogenous retroviruses. - Jan Paces; Adam Pavlícek; Václav Paces (Nucleic Acids Res., 2002)

HERVd: the Human Endogenous RetroViruses Database: update. - Jan Paces; Adam Pavlícek; Radek Zika; Vladimir V. Kapitonov; Jerzy Jurka; Václav Paces (Nucleic Acids Res., 2004)

WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences. - Radek Zika; Jan Paces; Adam Pavlícek; Václav Paces (Nucleic Acids Res., 2004)

AmtDB: a database of ancient human mitochondrial genomes. - Edvard Ehler; Jiri Novotný; Anna Juras; Maciej Chylenski; Ondrej Moravcík; Jan Paces (Nucleic Acids Res., 2019)