Jan Prins

According to our database1, Jan Prins
  • authored at least 65 papers between 1982 and 2017.
  • has a "Dijkstra number"2 of three.

Timeline

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Bibliography

2017
Improving Energy Efficiency in Memory-constrained Applications Using Core-specific Power Control.
Proceedings of the 5th International Workshop on Energy Efficient Supercomputing, 2017

An Adaptive Core-Specific Runtime for Energy Efficiency.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium, 2017

Performance and Scalability Study of FMM Kernels on Novel Multi- and Many-core Architectures.
Proceedings of the International Conference on Computational Science, 2017

2016
Asynchronous In Situ Connected-Components Analysis for Complex Fluid flows.
Proceedings of the Second Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2016

2015
Using Dynamic Duty Cycle Modulation to Improve Energy Efficiency in High Performance Computing.
Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, 2015

2014
A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU-GPU systems.
Computer Physics Communications, 2014

Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems.
Proceedings of the 2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014

Cache-aware asymptotically-optimal sampling-based motion planning.
Proceedings of the 2014 IEEE International Conference on Robotics and Automation, 2014

2013
Characterizing and mitigating work time inflation in task parallel programs.
Scientific Programming, 2013

A Robust Method for Transcript Quantification with RNA-Seq Data.
Journal of Computational Biology, 2013

Power Measurement and Concurrency Throttling for Energy Reduction in OpenMP Programs.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

Dynamic Load Balancing of the Adaptive Fast Multipole Method in Heterogeneous Systems.
Proceedings of the 2013 IEEE International Symposium on Parallel & Distributed Processing, 2013

2012
OpenMP task scheduling strategies for multicore NUMA systems.
IJHPCA, 2012

Characterizing and mitigating work time inflation in task parallel programs.
Proceedings of the SC Conference on High Performance Computing Networking, 2012

A Robust Method for Transcript Quantification with RNA-seq Data.
Proceedings of the Research in Computational Molecular Biology, 2012

2011
FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.
Bioinformatics, 2011

2010
Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs.
IEEE Trans. Information Technology in Biomedicine, 2010

Comparison of OpenMP 3.0 and Other Task Parallel Frameworks on Unbalanced Task Graphs.
International Journal of Parallel Programming, 2010

A probabilistic framework for aligning paired-end RNA-seq data.
Bioinformatics, 2010

2009
High Performance Computing with the Cell Broadband Engine.
Scientific Programming, 2009

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.
Journal of Computer-Aided Molecular Design, 2009

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.
Journal of Computer-Aided Molecular Design, 2009

Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs.
Proceedings of the Evolving OpenMP in an Age of Extreme Parallelism, 2009

2008
A message passing benchmark for unbalanced applications.
Simulation Modelling Practice and Theory, 2008

Genotype Sequence Segmentation: Handling Constraints and Noise.
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Scalable Dynamic Load Balancing Using UPC.
Proceedings of the 2008 International Conference on Parallel Processing, 2008

Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
PoClustering: Lossless Clustering of Dissimilarity Data.
Proceedings of the Seventh SIAM International Conference on Data Mining, 2007

Porting the GROMACS Molecular Dynamics Code to the Cell Processor.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

Dynamic Load Balancing of Unbalanced Computations Using Message Passing.
Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

2006
Local Structure Comparison of Proteins.
Advances in Computers, 2006

Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis.
Proceedings of the Sixth SIAM International Conference on Data Mining, 2006

UTS: An Unbalanced Tree Search Benchmark.
Proceedings of the Languages and Compilers for Parallel Computing, 2006

Clustering pair-wise dissimilarity data into partially ordered sets.
Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2006

2005
Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs.
Journal of Computational Biology, 2005

Mining Approximate Frequent Itemsets from Noisy Data.
Proceedings of the 5th IEEE International Conference on Data Mining (ICDM 2005), 2005

2004
Mining protein family specific residue packing patterns from protein structure graphs.
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis.
Proceedings of the Biocomputing 2004, 2004

SPIN: mining maximal frequent subgraphs from graph databases.
Proceedings of the Tenth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2004

2003
Evaluating the Impact of Programming Language Features on the Performance of Parallel Applications on Cluster Architectures.
Proceedings of the Languages and Compilers for Parallel Computing, 2003

Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism.
Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 2003

Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2000
A Design Methodology for Data-Parallel Applications.
IEEE Trans. Software Eng., 2000

Flattening Is an Improvement.
Proceedings of the Static Analysis, 7th International Symposium, 2000

1999
Irregular computations in Fortran - expression and implementation strategies.
Scientific Programming, 1999

A virtual environment for steered molecular dynamics.
Future Generation Comp. Syst., 1999

1998
Expressing Irregular Computations in Modern Fortran Dialects.
Proceedings of the Languages, 1998

Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution.
Proceedings of the Solving Irregularly Structured Problems in Parallel, 1998

1997
Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques.
J. Parallel Distrib. Comput., 1997

KHEPERA: A System for Rapid Implementation of Domain Specific Languages.
Proceedings of the Conference on Domain-Specific Languages, 1997

1996
A Refinement Methodology for Developing Data-Parallel Applications.
Proceedings of the Euro-Par '96 Parallel Processing, 1996

1995
Piecewise Execution of Nested Data-Parallel Programs.
Proceedings of the Languages and Compilers for Parallel Computing, 1995

1994
Specification and Development of Parallel Algorithms with the ProteusSystem.
Proceedings of the Specification of Parallel Algorithms, 1994

Connected components algorithms for mesh-connected parallel computers.
Proceedings of the Parallel Algorithms, 1994

1993
Transforming High-Level Data-Parallel Programs into Vector Operations.
Proceedings of the Fourth ACM SIGPLAN Symposium on Principles & Practice of Parallel Programming (PPOPP), 1993

1992
Implementations of Randomized Sorting on Large Parallel Machines.
SPAA, 1992

Prototyping N-Body Simulation in Proteus.
Proceedings of the 6th International Parallel Processing Symposium, 1992

1991
Prototyping parallel and distributed programs in Proteus.
Proceedings of the Third IEEE Symposium on Parallel and Distributed Processing, 1991

1989
Integrating Noninterfering Versions of Programs.
ACM Trans. Program. Lang. Syst., 1989

1988
Support for Integrating Program Variants in an Environment for Programming in the Large.
Proceedings of the International Workshop on Software Version and Configuration Control, 1988

On the Adequacy of Program Dependence Graphs for Representing Programs.
Proceedings of the Conference Record of the Fifteenth Annual ACM Symposium on Principles of Programming Languages, 1988

Integrating Non-Interfering Versions of Programs.
Proceedings of the Conference Record of the Fifteenth Annual ACM Symposium on Principles of Programming Languages, 1988

1987
McLaren's Masterpiece.
Sci. Comput. Program., 1987

1985
A new notion of encapsulation.
SIGPLAN Notices, 1985

1982
Monte Carlo techniques in code optimization.
Proceedings of the 15th annual workshop on Microprogramming, 1982


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