Fast Prediction of DNA Melting Bubbles Using DNA Thermodynamic Stability. - Jan Zrimec; Ales Lapanje (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Performance of regression models as a function of experiment noise. - Gang Li; Jan Zrimec; Boyang Ji; Jun Geng; Johan Larsbrink; Aleksej Zelezniak; Jens Nielsen; Martin K. M. Engqvist (CoRR, 2019)

Structural representations of DNA regulatory substrates can enhance sequence-based algorithms by associating functional sequence variants. - Jan Zrimec (BCB, 2020)

Learning the regulatory grammar of DNA for gene expression engineering. - Jan Zrimec; Aleksej Zelezniak (BCB, 2020)

Parallel Factor Analysis Enables Quantification and Identification of Highly Convolved Data-Independent-Acquired Protein Spectra. - Filip Buric; Jan Zrimec; Aleksej Zelezniak (Patterns, 2020)

Expanding functional protein sequence spaces using generative adversarial networks. - Donatas Repecka; Vykintas Jauniskis; Laurynas Karpus; Elzbieta Rembeza; Irmantas Rokaitis; Jan Zrimec; Simona Poviloniene; Audrius Laurynenas; Sandra Viknander; Wissam Abuajwa; Otto Savolainen; Rolandas Meskys; et al. (Nat. Mach. Intell., 2021)