ROAST: rotation gene set tests for complex microarray experiments. - Di Wu; Elgene Lim; François Vaillant; Marie-Liesse Asselin-Labat; Jane E. Visvader; Gordon K. Smyth (Bioinform., 2010)

Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR. - Yunshun Chen; Bhupinder Pal; Jane E. Visvader; Gordon K. Smyth (F1000Research, 2017)

Incorporating exon-exon junction reads enhances differential splicing detection. - Mai T. Pham; Michael J. G. Milevskiy; Jane E. Visvader; Yunshun Chen (BMC Bioinform., 2025)