VIEW: an exploratory molecular visualization system with user-definable interaction sequences. - Lawrence D. Bergman; Jane S. Richardson; David C. Richardson; Frederick P. Brooks Jr. (SIGGRAPH, 1993)

High-Grade Ore for Data Mining in 3D Structures. - Jane S. Richardson; David C. Richardson (Computational Biology and Genome Informatics, 2003)

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes. - Ian W. Davis; Laura Weston Murray; Jane S. Richardson; David C. Richardson (Nucleic Acids Res., 2004)

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. - Ian W. Davis; Andrew Leaver-Fay; Vincent B. Chen; Jeremy N. Block; Gary J. Kapral; Xueyi Wang; Laura Weston Murray; W. Bryan Arendall III; Jack Snoeyink; Jane S. Richardson; David C. Richardson (Nucleic Acids Res., 2007)

Algorithm for backrub motions in protein design. - Ivelin Georgiev; Daniel A. Keedy; Jane S. Richardson; David C. Richardson; Bruce Randall Donald (ISMB, 2008)

KinImmerse: Macromolecular VR for NMR ensembles. - Jeremy N. Block; David J. Zielinski; Vincent B. Chen; Ian W. Davis; E. Claire Vinson; Rachael Brady; Jane S. Richardson; David C. Richardson (Source Code Biol. Medicine, 2009)

The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data. - Robert Hoehndorf; Colin R. Batchelor; Thomas Bittner; Michel Dumontier; Karen Eilbeck; Rob Knight 001; Chris Mungall; Jane S. Richardson; Jesse Stombaugh; Eric Westhof; Craig L. Zirbel; Neocles Leontis (Appl. Ontology, 2011)

Protein molecules in 3D: complex behavior from simple local geometry plus weak interactions. - Jane S. Richardson; David C. Richardson (SCG, 2012)

The Role of Local Backrub Motions in Evolved and Designed Mutations. - Daniel A. Keedy; Ivelin Georgiev; Edward B. Triplett; Bruce Randall Donald; David C. Richardson; Jane S. Richardson (PLoS Comput. Biol., 2012)