The ChEBI Ontology: An Ontology for Chemistry within a Biological Context. - Janna Hastings; Kirill Degtyarenko; Paula de Matos; Marcus Ennis; Christoph Steinbeck (SWAT4LS, 2008)

ChEBI: a database and ontology for chemical entities of biological interest. - Kirill Degtyarenko; Paula de Matos; Marcus Ennis; Janna Hastings; Martin Zbinden; Alan McNaught; Rafael Alcántara; Michael Darsow; Mickaël Guedj; Michael Ashburner (Nucleic Acids Res., 2008)

Semantic access to chemistry data with the ChEBI ontology and web services. - Nico Adams; Paula de Matos; Adriano Dekker; Marcus Ennis; Janna Hastings; Kenneth Haug; Duncan Hull; Zara Josephs; Pablo A. Moreno; Steve Turner; Christoph Steinbeck (SWAT4LS, 2009)

Ontological dependence, dispositions and institutional reality in chemistry. - Colin R. Batchelor; Janna Hastings; Christoph Steinbeck (FOIS, 2010)

What are chemical structures and their relations? - Janna Hastings; Colin R. Batchelor; Christoph Steinbeck; Stefan Schulz 001 (FOIS, 2010)

Representing Chemicals Using OWL, Description Graphs and Rules. - Janna Hastings; Michel Dumontier; Duncan Hull; Matthew Horridge; Christoph Steinbeck; Robert Stevens 001; Ulrike Sattler; Tertia Hörne; Katarina Britz (OWLED, 2010)

ChEBI: a chemistry ontology and database. - Paula de Matos; Adriano Dekker; Marcus Ennis; Janna Hastings; Kenneth Haug; Steve Turner; Christoph Steinbeck (J. Cheminformatics, 2010)

Chemical Entities of Biological Interest: an update. - Paula de Matos; Rafael Alcántara; Adriano Dekker; Marcus Ennis; Janna Hastings; Kenneth Haug; Inmaculada Spiteri; Steve Turner; Christoph Steinbeck (Nucleic Acids Res., 2010)

The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences. - Janna Hastings; Werner Ceusters; Barry Smith 001; Kevin Mulligan (CONTEXT, 2011)

What's in an 'is about' Link? Chemical Diagrams and the Information Artifact Ontology. - Janna Hastings; Colin R. Batchelor; Fabian Neuhaus; Christoph Steinbeck (ICBO, 2011)

Dispositions and Processes in the Emotion Ontology. - Janna Hastings; Werner Ceusters; Barry Smith 001; Kevin Mulligan (ICBO, 2011)

Recent Developments in the ChEBI Ontology. - Janna Hastings; Paula de Matos; Adriano Dekker; Marcus Ennis; Kenneth Haug; Zara Josephs; Gareth I. Owen; Steve Turner; Christoph Steinbeck (ICBO, 2011)

Hyperontology for the Biomedical Ontologist: A Sketch and Some Examples. - Oliver Kutz; Till Mossakowski; Janna Hastings; Alexander García Castro; Aleksandra Sojic (ICBO, 2011)

Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules. - Ying Yan; Janna Hastings; Jee-Hyub Kim; Stefan Schulz 001; Christoph Steinbeck; Dietrich Rebholz-Schuhmann (ICBO, 2011)

A T-Box Generator for Testing Scalability of OWL Mereotopological Patterns. - Martin Boeker; Janna Hastings; Daniel Schober; Stefan Schulz 001 (OWLED, 2011)

Modelling Threshold Phenomena in OWL: Metabolite Concentrations as Evidence For Disorders. - Janna Hastings; Ludger Jansen; Christoph Steinbeck; Stefan Schulz 001 (OWLED, 2011)

Parts and Wholes, Shapes and Holes in Living Beings. - Janna Hastings; Colin R. Batchelor; Stefan Schulz 001 (SHAPES, 2011)

Modularization Requirements in Bio-Ontologies: A Case Study of ChEbi. - Janna Hastings; Colin R. Batchelor; Christoph Steinbeck; Stefan Schulz 001 (WoMO, 2011)

Unintended consequences of existential quantifications in biomedical ontologies. - Martin Boeker; Ilinca Tudose; Janna Hastings; Daniel Schober; Stefan Schulz 001 (BMC Bioinform., 2011)

Chemical ontologies: what are they, what are they for and what are the challenges. - Janna Hastings; Nico Adams; Marcus Ennis; Duncan Hull; Christoph Steinbeck (J. Cheminformatics, 2011)

Modelling Highly Symmetrical Molecules: Linking Ontologies and Graphs. - Oliver Kutz; Janna Hastings; Till Mossakowski (AIMSA, 2012)

Waves and fields in bio-ontologies. - Colin R. Batchelor; Janna Hastings (ICBO, 2012)

Modular Extensions to the ChEBI Ontology. - Janna Hastings; Paula de Matos; Adriano Dekker; Marcus Ennis; Venkatesh Muthukrishnan; Steve Turner; Gareth I. Owen; Christoph Steinbeck (ICBO, 2012)

Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies. - Janna Hastings; Nicolas Le Novère; Werner Ceusters; Kevin Mulligan; Barry Smith 001 (ICBO, 2012)

Process attributes in bio-ontologies. - André Queiroz de Andrade; Ward Blondé; Janna Hastings; Stefan Schulz 001 (BMC Bioinform., 2012)

Self-organizing ontology of biochemically relevant small molecules. - Leonid L. Chepelev; Janna Hastings; Marcus Ennis; Christoph Steinbeck; Michel Dumontier (BMC Bioinform., 2012)

Cheminformatics. - Jörg K. Wegner; Aaron D. Sterling; Rajarshi Guha; Andreas Bender 002; Jean-Loup Faulon; Janna Hastings; Noel M. O'Boyle; John P. Overington; Herman van Vlijmen; Egon L. Willighagen (Commun. ACM, 2012)

Structured chemical class definitions and automated matching for chemical ontology evolution. - Lian Duan; Janna Hastings; Paula de Matos; Marcus Ennis; Christoph Steinbeck (J. Cheminformatics, 2012)

Structure-based classification and ontology in chemistry. - Janna Hastings; Despoina Magka; Colin R. Batchelor; Lian Duan; Robert Stevens 001; Marcus Ennis; Christoph Steinbeck (J. Cheminformatics, 2012)

Shape Perception in Chemistry. - Janna Hastings; Colin R. Batchelor; Mitsuhiro Okada (SHAPES, 2013)

An Ontology for Drug-drug Interactions. - María Herrero-Zazo; Janna Hastings; Isabel Segura-Bedmar; Samuel Croset; Paloma Martínez; Christoph Steinbeck (SWAT4LS, 2013)

The MetaboLights repository: curation challenges in metabolomics. - Reza M. Salek; Kenneth Haug; Pablo Conesa; Janna Hastings; Mark Williams; Tejasvi Mahendraker; Eamonn Maguire; Alejandra N. González-Beltrán; Philippe Rocca-Serra; Susanna-Assunta Sansone; Christoph Steinbeck (Database J. Biol. Databases Curation, 2013)

Exploiting disjointness axioms to improve semantic similarity measures. - João D. Ferreira; Janna Hastings; Francisco M. Couto (Bioinform., 2013)

OntoQuery: easy-to-use web-based OWL querying. - Ilinca Tudose; Janna Hastings; Venkatesh Muthukrishnan; Gareth I. Owen; Steve Turner; Adriano Dekker; Namrata Kale; Marcus Ennis; Christoph Steinbeck (Bioinform., 2013)

UniChem: a unified chemical structure cross-referencing and identifier tracking system. - Jon Chambers; Mark Davies; Anna Gaulton; Anne Hersey; Sameer Velankar; Robert Petryszak; Janna Hastings; Louisa J. Bellis; Shaun McGlinchey; John P. Overington (J. Cheminformatics, 2013)

FMCS: a novel algorithm for the multiple MCS problem. - Andrew Dalke; Janna Hastings (J. Cheminformatics, 2013)

Expanding natural product chemistry resources at the EBI. - Janna Hastings; Pablo Conesa; Adriano Dekker; Marcus Ennis; Kenneth Haug; Kalai Vanii Jayaseelan; Namrata Kale; Tejasvi Mahendraker; Pablo A. Moreno; Venkatesh Muthukrishnan; Gareth I. Owen; Reza M. Salek; et al. (J. Cheminformatics, 2013)

The ChEMBL database as linked open data. - Egon L. Willighagen; Andra Waagmeester; Ola Spjuth; Peter Ansell; Antony J. Williams; Valery Tkachenko; Janna Hastings; Bin Chen 002; David J. Wild 001 (J. Cheminformatics, 2013)

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. - Janna Hastings; Paula de Matos; Adriano Dekker; Marcus Ennis; Bhavana Harsha; Namrata Kale; Venkatesh Muthukrishnan; Gareth I. Owen; Steve Turner; Mark Williams; Christoph Steinbeck (Nucleic Acids Res., 2013)

MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data. - Kenneth Haug; Reza M. Salek; Pablo Conesa; Janna Hastings; Paula de Matos; Mark Rijnbeek; Tejasvi Mahendraker; Mark Williams; Steffen Neumann; Philippe Rocca-Serra; Eamonn Maguire; Alejandra N. González-Beltrán; et al. (Nucleic Acids Res., 2013)

The first eNanoMapper prototype: A substance database to support safe-by-design. - Nina Jeliazkova; Philip Doganis; Bengt Fadeel; Roland Grafstrom; Janna Hastings; Vedrin Jeliazkov; Pekka Kohonen; Cristian R. Munteanu; Haralambos Sarimveis; Bart Smeets; Georgia Tsiliki; David Vorgrimmler; et al. (BIBM, 2014)

Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference. - Janna Hastings; Andy Brass; Colin Caine; Caroline Jay; Robert Stevens 001 (J. Biomed. Semant., 2014)

Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. - Janna Hastings; Gwen A. Frishkoff; Barry Smith 001; Mark Jensen; Russell A. Poldrack; Jane Lomax; Anita E. Bandrowski; Fahim T. Imam; Jessica A. Turner; Maryann E. Martone (Frontiers Neuroinformatics, 2014)

ChEBI for systems biology and metabolic modelling. - Janna Hastings; Neil Swainston; Venkatesh Muthukrishnan; Namrata Kale; Adriano Dekker; Gareth I. Owen; Steve Turner; Pedro Mendes 001; Christoph Steinbeck (ICBO, 2015)

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment. - Janna Hastings; Nina Jeliazkova; Gareth I. Owen; Georgia Tsiliki; Cristian R. Munteanu; Christoph Steinbeck; Egon L. Willighagen (J. Biomed. Semant., 2015)

BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology. - Pablo A. Moreno; Stephan Beisken; Bhavana Harsha; Venkatesh Muthukrishnan; Ilinca Tudose; Adriano Dekker; Stefanie Dornfeldt; Franziska Taruttis; Ivo Grosse; Janna Hastings; Steffen Neumann; Christoph Steinbeck (BMC Bioinform., 2015)

Digital Scholarship and Open Science in Psychology and the Behavioral Sciences (Dagstuhl Perpectives Workshop 15302). - Alexander García Castro; Janna Hastings; Robert Stevens 001; Erich Weichselgartner (Dagstuhl Reports, 2015)

Application of Domain Ontologies to Natural Language Processing: A Case Study for Drug-Drug Interactions. - María Herrero-Zazo; Isabel Segura-Bedmar; Janna Hastings; Paloma Martínez (Int. J. Inf. Retr. Res., 2015)

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. - Gang Fu; Colin R. Batchelor; Michel Dumontier; Janna Hastings; Egon L. Willighagen; Evan Bolton (J. Cheminformatics, 2015)

DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug-Drug Interactions and Their Mechanisms. - María Herrero-Zazo; Isabel Segura-Bedmar; Janna Hastings; Paloma Martínez (J. Chem. Inf. Model., 2015)

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy. - Yannick Djoumbou; Roman Eisner; Craig Knox; Leonid L. Chepelev; Janna Hastings; Gareth I. Owen; Eoin Fahy; Christoph Steinbeck; Shankar Subramanian; Evan Bolton; Russell Greiner; David S. Wishart (J. Cheminformatics, 2016)

libChEBI: an API for accessing the ChEBI database. - Neil Swainston; Janna Hastings; Adriano Dekker; Venkatesh Muthukrishnan; John W. May; Christoph Steinbeck; Pedro Mendes 001 (J. Cheminformatics, 2016)

ChEBI in 2016: Improved services and an expanding collection of metabolites. - Janna Hastings; Gareth I. Owen; Adriano Dekker; Marcus Ennis; Namrata Kale; Venkatesh Muthukrishnan; Steve Turner; Neil Swainston; Pedro Mendes 001; Christoph Steinbeck (Nucleic Acids Res., 2016)

Representing Literary Characters and their Attributes in an Ontology. - Janna Hastings; Stefan Schulz 001 (JOWO, 2019)

The Literary Theme Ontology for Media Annotation and Information Retrieval. - Paul Sheridan; Mikael Onsjö; Janna Hastings (JOWO, 2019)

Mental Functioning Ontologies. - Guy Divita; Maryanne Sacco; Janna Hastings; Piper Ranallo (AMIA, 2021)

Automated and Explainable Ontology Extension based on Deep Learning: A Case Study in the Chemical Domain. - Adel Memariani; Martin Glauer; Fabian Neuhaus; Till Mossakowski; Janna Hastings (DAO-XAI, 2021)

Ontologies for the Behavioural and Social Sciences: Opportunities and Challenges. - Janna Hastings; Robert West; Susan Michie; Caitlin Notley; Sharon Cox 002 (ICBO, 2021)

FOWL - An OWL to FOL Translator. - Simon Flügel; Anna Kleinau; Fabian Neuhaus; Martin Glauer; Janna Hastings (JOWO, 2021)

Scientific Ontologies, Digital Curation and the Learning Knowledge Ecosystem. - Janna Hastings (Qurator, 2021)

Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences. - Emma Norris; Janna Hastings; Marta M. Marques; Ailbhe N. Finnerty; Silje Zink; Susan Michie (J. Biomed. Semant., 2021)

Learning chemistry: exploring the suitability of machine learning for the task of structure-based chemical ontology classification. - Janna Hastings; Martin Glauer; Adel Memariani; Fabian Neuhaus; Till Mossakowski (J. Cheminformatics, 2021)

ESC-Rules: Explainable, Semantically Constrained Rule Sets. - Martin Glauer; Robert West; Susan Michie; Janna Hastings (NeSy, 2022)

Ontology development is consensus creation, not (merely) representation. - Fabian Neuhaus; Janna Hastings (Appl. Ontology, 2022)

When one Logic is Not Enough: Integrating First-order Annotations in OWL Ontologies. - Simon Flügel; Martin Glauer; Fabian Neuhaus; Janna Hastings (CoRR, 2022)

Human Factors Influencing the Experience of Healthcare Professionals Using Digital Tools. - Marie Wosny; Livia Strasser; Janna Hastings (ICIMTH, 2023)

Ontology Pre-training for Poison Prediction. - Martin Glauer; Fabian Neuhaus; Till Mossakowski; Janna Hastings (KI, 2023)

Applied ontology: Where are we now and where are we going? - Janna Hastings; John A. Bateman (Appl. Ontology, 2023)

Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. - Jiaoyan Chen 001; Hang Dong 002; Janna Hastings; Ernesto Jiménez-Ruiz; Vanessa López; Pierre Monnin; Catia Pesquita; Petr Skoda 001; Valentina Tamma (TGDK, 2023)

Neuro-Symbolic Semantic Learning for Chemistry. - Martin Glauer; Till Mossakowski; Fabian Neuhaus; Adel Memariani; Janna Hastings (Compendium of Neurosymbolic Artificial Intelligence, 2023)

Applying Large Language Models to Interpret Qualitative Interviews in Healthcare. - Marie Wosny; Janna Hastings (MIE, 2024)

Cross-Care: Assessing the Healthcare Implications of Pre-training Data on Language Model Bias. - Shan Chen 004; Jack Gallifant; Mingye Gao; Pedro Moreira; Nikolaj Munch; Ajay Muthukkumar; Arvind Rajan; Jaya Kolluri; Amelia Fiske; Janna Hastings; Hugo J. W. L. Aerts; Brian Anthony; et al. (NeurIPS, 2024)

Interpretable ontology extension in chemistry. - Martin Glauer; Adel Memariani; Fabian Neuhaus; Till Mossakowski; Janna Hastings (Semantic Web, 2024)

Horned-OWL: Flying Further and Faster with Ontologies. - Phillip Lord; Björn Gehrke; Martin Larralde; Janna Hastings; Filippo De Bortoli; James A. Overton; James P. Balhoff; Jennifer D. Warrender (TGDK, 2024)

Horned-OWL. - Phillip Lord; Björn Gehrke; Martin Larralde; Janna Hastings; Filippo De Bortoli; James A. Overton; James P. Balhoff; Jennifer D. Warrender (DROPS Artifacts, 2024)

Implementing large language models in healthcare while balancing control, collaboration, costs and security. - Fabio Dennstädt; Janna Hastings; Paul Martin Putora; Max Schmerder; Nikola Cihoric (npj Digit. Medicine, 2025)

Chemical classification program synthesis using generative artificial intelligence. - Christopher J. Mungall; Adnan Malik; Daniel R. Korn; Justin T. Reese; Noel M. O'Boyle; Janna Hastings (CoRR, 2025)

A CDE-based data structure for radiotherapeutic decision-making in breast cancer. - Fabio Dennstädt; Maximilian Schmalfuss; Johannes Zink 001; Janna Hastings; Roberto Gaio; Max Schmerder; Nikola Cihoric; Paul Martin Putora (BMC Medical Informatics Decis. Mak., 2025)