Methods for interpreting a self-organized map in data analysis. - Samuel Kaski; Janne Nikkilä; Teuvo Kohonen (ESANN, 1998)

Clustering Gene Expression Data by Mutual Information with Gene Function. - Samuel Kaski; Janne Sinkkonen; Janne Nikkilä (ICANN, 2001)

Discriminative Clustering: Optimal Contingency Tables by Learning Metrics. - Janne Sinkkonen; Samuel Kaski; Janne Nikkilä (ECML, 2002)

Analysis and visualization of gene expression data using Self-Organizing Maps. - Janne Nikkilä; Petri Törönen; Samuel Kaski; Jarkko Venna; Eero Castrén; Garry Wong (Neural Networks, 2002)

Trustworthiness and metrics in visualizing similarity of gene expression. - Samuel Kaski; Janne Nikkilä; Merja Oja; Jarkko Venna; Petri Törönen; Eero Castrén (BMC Bioinform., 2003)

Methods for Exploratory Cluster Analysis. - Samuel Kaski; Janne Nikkilä; Teuvo Kohonen (Intelligent Exploration of the Web, 2003)

Associative Clustering. - Janne Sinkkonen; Janne Nikkilä; Leo Lahti; Samuel Kaski (ECML, 2004)

Exploring Dependencies Between Yeast Stress Genes and Their Regulators. - Janne Nikkilä; Christophe Roos; Samuel Kaski (IDEAL, 2004)

Exploratory modeling of yeast stress response and its regulation with gcca and associative clustering. - Janne Nikkilä; Christophe Roos; Eerika Savia; Samuel Kaski (Int. J. Neural Syst., 2005)

Associative Clustering for Exploring Dependencies between Functional Genomics Data Sets. - Samuel Kaski; Janne Nikkilä; Janne Sinkkonen; Leo Lahti; Juha E. A. Knuuttila; Christophe Roos (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

Exploratory cluster analysis of genomic high-throughput data sets and their dependencies. - Janne Nikkilä (2005)

Partial Clustering for Tissue Segmentation in MRI. - Nicolau Gonçalves; Janne Nikkilä; Ricardo Vigário (ICONIP (2), 2008)

Two-way analysis of high-dimensional collinear data. - Ilkka Huopaniemi; Tommi Suvitaival; Janne Nikkilä; Matej Oresic; Samuel Kaski (Data Min. Knowl. Discov., 2009)

Multivariate multi-way analysis of multi-source data. - Ilkka Huopaniemi; Tommi Suvitaival; Janne Nikkilä; Matej Oresic; Samuel Kaski (Bioinform., 2010)

Metabolic Regulation in Progression to Autoimmune Diabetes. - Marko Sysi-Aho; Andrey Ermolov; Peddinti V. Gopalacharyulu; Abhishek Tripathi; Tuulikki Seppänen-Laakso; Johanna Maukonen; Ismo Mattila; Suvi T. Ruohonen; Laura Vähätalo; Laxman Yetukuri; Taina Härkönen; Erno Lindfors; et al. (PLoS Comput. Biol., 2011)

Self-Supervised MRI Tissue Segmentation by Discriminative Clustering. - Nicolau Gonçalves; Janne Nikkilä; Ricardo Vigário (Int. J. Neural Syst., 2014)