Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization. - Saskia Trescher; Jannes Münchmeyer; Ulf Leser (BMC Syst. Biol., 2017)

NLProlog: Reasoning with Weak Unification for Question Answering in Natural Language. - Leon Weber; Pasquale Minervini; Jannes Münchmeyer; Ulf Leser; Tim Rocktäschel (ACL (1), 2019)

HUNER: improving biomedical NER with pretraining. - Leon Weber; Jannes Münchmeyer; Tim Rocktäschel; Maryam Habibi; Ulf Leser (Bioinform., 2020)

Extend, don't rebuild: Phrasing conditional graph modification as autoregressive sequence labelling. - Leon Weber; Jannes Münchmeyer; Samuele Garda; Ulf Leser (EMNLP (1), 2021)

HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition. - Leon Weber; Mario Sänger; Jannes Münchmeyer; Maryam Habibi; Ulf Leser; Alan Akbik (Bioinform., 2021)

Machine learning for fast and accurate assessment of earthquake source parameters - Jannes Münchmeyer (2022)

SeisLM: a Foundation Model for Seismic Waveforms. - Tianlin Liu; Jannes Münchmeyer; Laura Laurenti; Chris Marone; Maarten V. de Hoop; Ivan Dokmanic (CoRR, 2024)