Integration of Enzyme Kinetic Data from Various Sources. - Simon Borger; Jannis Uhlendorf; Anselm Helbig; Wolfram Liebermeister (Silico Biol., 2007)

Annotation and merging of SBML models with semanticSBML. - Falko Krause; Jannis Uhlendorf; Timo Lubitz; Marvin Schulz; Edda Klipp; Wolfram Liebermeister (Bioinform., 2010)

Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation. - Wolfram Liebermeister; Jannis Uhlendorf; Edda Klipp (Bioinform., 2010)

Towards Real-Time Control of Gene Expression: Controlling the Hog Signaling Cascade. - Jannis Uhlendorf; Samuele Bottani; François Fages; Pascal Hersen; Grégory Batt (Pacific Symposium on Biocomputing, 2011)

Identification of biological models from single-cell data: A comparison between mixed-effects and moment-based inference. - Andres M. Gonzalez; Jannis Uhlendorf; Joe Schaul; Eugenio Cinquemani; Grégory Batt; Giancarlo Ferrari-Trecate (ECC, 2013)

Real-time feedback control of gene expression. - Jannis Uhlendorf (2013)

SensA: web-based sensitivity analysis of SBML models. - Max Flöttmann; Jannis Uhlendorf; Till Scharp; Edda Klipp; Thomas W. Spiesser (Bioinform., 2014)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)