Rapid motif-based prediction of circular permutations in multi-domain proteins. - January 3rd Weiner; Geraint Thomas; Erich Bornberg-Bauer (Bioinform., 2005)

Identifying protein domain insertions in large databases. - Tobias Lohe; January 3rd Weiner; Erich Bornberg-Bauer (Informatiktage, 2007)

Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN). - Francois Beaussart; January 3rd Weiner; Erich Bornberg-Bauer (Bioinform., 2007)

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins. - Andrew D. Moore; Andreas Held; Nicolas Terrapon; January 3rd Weiner; Erich Bornberg-Bauer (Bioinform., 2014)

Rapid similarity search of proteins using alignments of domain arrangements. - Nicolas Terrapon; January 3rd Weiner; Sonja Grath; Andrew D. Moore; Erich Bornberg-Bauer (Bioinform., 2014)

Ranking metrics in gene set enrichment analysis: do they matter? - Joanna Zyla; Michal Marczyk; January 3rd Weiner; Joanna Polanska (BMC Bioinform., 2017)

Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms. - Joanna Zyla; Michal Marczyk; Teresa Domaszewska; Stefan H. E. Kaufmann; Joanna Polanska; January 3rd Weiner (Bioinform., 2019)