NxTrim: optimized trimming of Illumina mate pair reads. - Jared O'Connell; Ole Schulz-Trieglaff; Emma Carlson; Matthew M. Hims; Niall A. Gormley; Anthony J. Cox (Bioinform., 2015)

Rapid genotype refinement for whole-genome sequencing data using multi-variate normal distributions. - Rudy Arthur; Jared O'Connell; Ole Schulz-Trieglaff; Anthony J. Cox (Bioinform., 2016)

AKT: ancestry and kinship toolkit. - Rudy Arthur; Ole Schulz-Trieglaff; Anthony J. Cox; Jared O'Connell (Bioinform., 2017)