The Role of PAS Kinase in PASsing the Glucose Signal. - Julianne H. Grose; Jared Rutter (Sensors, 2010)

Visual Exploration of Metabolic Networks to Provide Context for Metabolic Profiling in Precision Medicine. - T. Cameron Waller; Jared Rutter; Alexander Lex (AMIA, 2017)

XPRESSyourself: Enhancing, standardizing, and automating ribosome profiling computational analyses yields improved insight into data. - Jordan A. Berg; Jonathan R. Belyeu; Jeffrey T. Morgan; Yeyun Ouyang; Alex J. Bott; Aaron R. Quinlan; Jason Gertz; Jared Rutter (PLoS Comput. Biol., 2020)