The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. - Folker Meyer; Daniel Paarmann; Mark D'Souza; Robert Olson; Elizabeth M. Glass; Michael Kubal; Tobias Paczian; Alexis A. Rodriguez; Rick Stevens; Andreas Wilke; Jared Wilkening; Robert A. Edwards (BMC Bioinform., 2008)

Using clouds for metagenomics: A case study. - Jared Wilkening; Andreas Wilke; Narayan Desai; Folker Meyer (CLUSTER, 2009)

An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud. - Andreas Wilke; Jared Wilkening; Elizabeth M. Glass; Narayan Desai; Folker Meyer (Concurr. Comput. Pract. Exp., 2011)

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal. - William L. Trimble; Kevin P. Keegan; Mark D'Souza; Andreas Wilke; Jared Wilkening; Jack A. Gilbert; Folker Meyer (BMC Bioinform., 2012)

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. - Andreas Wilke; Travis Harrison; Jared Wilkening; Dawn Field; Elizabeth M. Glass; Nikos Kyrpides; Konstantinos Mavrommatis; Folker Meyer (BMC Bioinform., 2012)

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE. - Kevin P. Keegan; William L. Trimble; Jared Wilkening; Andreas Wilke; Travis Harrison; Mark D'Souza; Folker Meyer (PLoS Comput. Biol., 2012)

A scalable data analysis platform for metagenomics. - Wei Tang 001; Jared Wilkening; Narayan Desai; Wolfgang Gerlach; Andreas Wilke; Folker Meyer (IEEE BigData, 2013)

Shock: Active Storage for Multicloud Streaming Data Analysis. - Andreas Wilke; Wolfgang Gerlach; Travis Harrison; Tobias Paczian; Wei Tang 001; William L. Trimble; Jared Wilkening; Narayan Desai; Folker Meyer (BDC, 2015)

A RESTful API for Accessing Microbial Community Data for MG-RAST. - Andreas Wilke; Jared Bischof; Travis Harrison; Tom Brettin; Mark D'Souza; Wolfgang Gerlach; Hunter Matthews; Tobias Paczian; Jared Wilkening; Elizabeth M. Glass; Narayan Desai; Folker Meyer (PLoS Comput. Biol., 2015)