Global arrays: a portable "shared-memory" programming model for distributed memory computers. - Jarek Nieplocha; Robert J. Harrison; Richard J. Littlefield (SC, 1994)

High Performance Computational Chemistry: NWChem and Fully Distributed Parallel Applications. - Martyn F. Guest; Edoardo Aprà; David E. Bernholdt; Herbert A. Früchtl; Robert J. Harrison; Ricky A. Kendall; R. A. Kutteh; X. Long; John B. Nicholas; Jeffrey A. Nichols; H. L. Taylor; Adrian T. Wong; et al. (PARA, 1995)

Performance Improvement of Asynchronous Iterations by Non-Uniform Load Distribution. - Jarek Nieplocha; Tsun-Zee Mai (PP, 1995)

Shared Memory NUMA Programming on I-WAY. - Jarek Nieplocha; Robert J. Harrison (HPDC, 1996)

High-performance computing in chemistry: NW Chem. - Martyn F. Guest; Edoardo Aprà; David E. Bernholdt; Herbert A. Früchtl; Robert J. Harrison; Ricky A. Kendall; R. A. Kutteh; X. Long; John B. Nicholas; Jeffrey A. Nichols; H. L. Taylor; Adrian T. Wong; et al. (Future Gener. Comput. Syst., 1996)

Toward high-performance computational chemistry: II. A scalable self-consistent field program. - Robert J. Harrison; Martyn F. Guest; Ricky A. Kendall; David E. Bernholdt; Adrian T. Wong; Mark Stave; James L. Anchell; Anthony C. Hess; Rik J. Littlefield; George L. Fann; Jarek Nieplocha; Greg S. Thomas; et al. (J. Comput. Chem., 1996)

Global arrays: A nonuniform memory access programming model for high-performance computers. - Jarek Nieplocha; Robert J. Harrison; Richard J. Littlefield (J. Supercomput., 1996)

Optimizing Collective I/O Performance on Parallel Computers: A Multisystem Study. - Ying Chen 001; Jarek Nieplocha; Ian T. Foster; Marianne Winslett (International Conference on Supercomputing, 1997)

A massively parallel multireference configuration interaction program: The parallel COLUMBUS program. - Holger Dachsel; Hans Lischka; Ron L. Shepard; Jarek Nieplocha; Robert J. Harrison (J. Comput. Chem., 1997)

Shared Memory Programming in Metacomputing Environments: The Global Array Approach. - Jarek Nieplocha; Robert J. Harrison (J. Supercomput., 1997)

Distant I/O: One-Sided Access to Secondary Storage on Remote Processors. - Jarek Nieplocha; Ian T. Foster; Holger Dachsel (HPDC, 1998)

Performance and Experience with LAPI - a New High-Performance Communication Library for the IBM RS/6000 SP. - Gautam Shah; Jarek Nieplocha; Jamshed H. Mirza; Chulho Kim; Robert J. Harrison; Rama Govindaraju; Kevin J. Gildea; Paul DiNicola; Carl A. Bender (IPPS/SPDP, 1998)

An out-of-core implementation of the COLUMBUS massively-parallel multireference configuration interaction program. - Holger Dachsel; Jarek Nieplocha; Robert J. Harrison (SC, 1998)

ChemIo: High Performance Parallel I/o for Computational Chemistry Applications. - Jarek Nieplocha; Ian T. Foster; Ricky A. Kendall (Int. J. High Perform. Comput. Appl., 1998)

ARMCI: A Portable Remote Memory Copy Libray for Ditributed Array Libraries and Compiler Run-Time Systems. - Jarek Nieplocha; Bryan Carpenter (IPPS/SPDP Workshops, 1999)

Implementing noncollective parallel I/O in cluster environments using Active Message communication. - Jarek Nieplocha; Holger Dachsel; Ian T. Foster (Clust. Comput., 1999)

A Multiprotocol Communication Support for the Global Address Space Programming Model on the IBM SP. - Jarek Nieplocha; Jialin Ju; Tjerk P. Straatsma (Euro-Par, 2000)

Computational chemistry on Fujitsu vector-parallel processors: Hardware and programming environment. - Ross H. Nobes; Alistair P. Rendell; Jarek Nieplocha (Parallel Comput., 2000)

One-sided Communication on the Myrinet-based SMP Clusters using the GM Message-Passing Library. - Jarek Nieplocha; Jialin Ju; Edoardo Aprà (IPDPS, 2001)

Building an Application Domain Specific Programming Framework for Computational Fluid Dynamics Calculations on Parallel Computers. - Jarek Nieplocha; Harold Trease; Jialin Ju; D. Rector; Bruce J. Palmer (PP, 2001)

Efficient Barrier Using Remote Memory Operations on VIA-Based Clusters. - Rinku Gupta; Vinod Tipparaju; Jarek Nieplocha; Dhabaleswar K. Panda 001 (CLUSTER, 2002)

Protocols and Strategies for Optimizing Performance of Remote Memory Operations on Clusters. - Jarek Nieplocha; Vinod Tipparaju; Amina Saify; Dhabaleswar K. Panda 001 (IPDPS, 2002)

Efficient Algorithms for Ghost Cell Updates on Two Classes of MPP Architectures. - Bruce J. Palmer; Jarek Nieplocha (IASTED PDCS, 2002)

Optimizing Mechanisms for Latency Tolerance in Remote Memory Access Communication on Clusters. - Jarek Nieplocha; Vinod Tipparaju; Manojkumar Krishnan; Gopalakrishnan Santhanaraman; Dhabaleswar K. Panda 001 (CLUSTER, 2003)

Shared Memory Mirroring for Reducing Communication Overhead on Commodity Networks. - Bruce J. Palmer; Jarek Nieplocha; Edoardo Aprà (CLUSTER, 2003)

Exploiting Non-blocking Remote Memory Access Communication in Scientific Benchmarks. - Vinod Tipparaju; Manojkumar Krishnan; Jarek Nieplocha; Gopalakrishnan Santhanaraman; Dhabaleswar K. Panda 001 (HiPC, 2003)

Optimizing Synchronization Operations for Remote Memory Communication Systems. - Darius Buntinas; Amina Saify; Dhabaleswar K. Panda 001; Jarek Nieplocha (IPDPS, 2003)

Efficient Collective Operations Using Remote Memory Operations on VIA-Based Clusters. - Rinku Gupta; Pavan Balaji; Dhabaleswar K. Panda 001; Jarek Nieplocha (IPDPS, 2003)

Fast Collective Operations Using Shared and Remote Memory Access Protocols on Clusters. - Vinod Tipparaju; Jarek Nieplocha; Dhabaleswar K. Panda 001 (IPDPS, 2003)

One-Sided Communication on Clusters with Myrinet. - Jarek Nieplocha; Edoardo Aprà; Jialin Ju; Vinod Tipparaju (Clust. Comput., 2003)

Co-array Python: A Parallel Extension to the Python Language. - Craig Edward Rasmussen; Matthew J. Sottile; Jarek Nieplocha; Robert W. Numrich; Eric Jones (Euro-Par, 2004)

Efficient Layout Transformation for Disk-Based Multidimensional Arrays. - Sriram Krishnamoorthy; Gerald Baumgartner; Chi-Chung Lam; Jarek Nieplocha; P. Sadayappan (HiPC, 2004)

Toward Efficient Compilation of User-Defined Extensible Fortran Directives. - Matthew Rosing; Jarek Nieplocha; Steve Yabusaki (HIPS, 2004)

What are the future trends in high-performance inter.connects for parallel computers? [Panel 1]. - Fabrizio Petrini; José E. Moreira; Jarek Nieplocha; Mark K. Seager; Craig B. Stunkel; Greg Thorson; Paul Terry; Srinidhi Varadarajan (Hot Interconnects, 2004)

Optimizing Parallel Multiplication Operation for Rectangular and Transposed Matrices. - Manojkumar Krishnan; Jarek Nieplocha (ICPADS, 2004)

Processor-Group Aware Runtime Support for Shared- and Global-Address Space Models. - Manojkumar Krishnan; Vinod Tipparaju; Bruce J. Palmer; Jarek Nieplocha (ICPP Workshops, 2004)

SRUMMA: A Matrix Multiplication Algorithm Suitable for Clusters and Scalable Shared Memory Systems. - Manojkumar Krishnan; Jarek Nieplocha (IPDPS, 2004)

Host-Assisted Zero-Copy Remote Memory Access Communication on InfiniBand. - Vinod Tipparaju; Gopalakrishnan Santhanaraman; Jarek Nieplocha; Dhabaleswar K. Panda 001 (IPDPS, 2004)

Optimisation and performance evaluation of mechanisms for latency tolerance in remote memory access communication on clusters. - Jarek Nieplocha; Vinod Tipparaju; Manojkumar Krishnan; Gopalakrishnan Santhanaraman; Dhabaleswar K. Panda 001 (Int. J. High Perform. Comput. Netw., 2004)

Component-based integration of chemistry and optimization software. - Joseph P. Kenny; Steven Benson; Yuri Alexeev; Jason Sarich; Curtis L. Janssen; Lois Curfman McInnes; Manojkumar Krishnan; Jarek Nieplocha; Elizabeth Jurrus; Carl Fahlstrom; Theresa L. Windus (J. Comput. Chem., 2004)

Exploiting processor groups to extend scalability of the GA shared memory programming model. - Jarek Nieplocha; Manojkumar Krishnan; Bruce J. Palmer; Vinod Tipparaju; Yeliang Zhang (Conf. Computing Frontiers, 2005)

Symmetric Data Objects and Remote Memory Access Communication for Fortran-95 Applications. - Jarek Nieplocha; Doug Baxter; Vinod Tipparaju; Craig Edward Rasmussen; Robert W. Numrich (Euro-Par, 2005)

Data and Computation Abstractions for Dynamic and Irregular Computations. - Sriram Krishnamoorthy; Jarek Nieplocha; P. Sadayappan (HiPC, 2005)

An Evaluation of Two Implementation Strategies for Optimizing One-Sided Atomic Reduction. - Jarek Nieplocha; Vinod Tipparaju; Edoardo Aprà (IPDPS, 2005)

Parallelization of the NAS Conjugate Gradient Benchmark Using the Global Arrays Shared Memory Programming Model. - Yeliang Zhang; Vinod Tipparaju; Jarek Nieplocha; Salim Hariri (IPDPS, 2005)

Multilevel Parallelism in Computational Chemistry using Common Component Architecture and Global Arrays. - Manojkumar Krishnan; Yuri Alexeev; Theresa L. Windus; Jarek Nieplocha (SC, 2005)

Optimizing All-to-All Collective Communication by Exploiting Concurrency in Modern Networks. - Vinod Tipparaju; Jarek Nieplocha (SC, 2005)

QsNetII: Defining High-Performance Network Design. - Jon Beecroft; David Addison; David Hewson; Moray McLaren; Duncan Roweth; Fabrizio Petrini; Jarek Nieplocha (IEEE Micro, 2005)

Topology-aware tile mapping for clusters of SMPs. - Daniel G. Chavarría-Miranda; Jarek Nieplocha; Vinod Tipparaju (Conf. Computing Frontiers, 2006)

Memory efficient parallel matrix multiplication operation for irregular problems. - Manojkumar Krishnan; Jarek Nieplocha (Conf. Computing Frontiers, 2006)

A Performance Instrumentation Framework to Characterize Computation-Communication Overlap in Message-Passing Systems. - Aniruddha G. Shet; P. Sadayappan; David E. Bernholdt; Jarek Nieplocha; Vinod Tipparaju (CLUSTER, 2006)

An extensible global address space framework with decoupled task and data abstractions. - Sriram Krishnamoorthy; Ümit V. Çatalyürek; Jarek Nieplocha; Atanas Rountev; P. Sadayappan (IPDPS, 2006)

An approach to locality-conscious load balancing and transparent memory hierarchy management with a global-address-space parallel programming model. - Sriram Krishnamoorthy; Ümit V. Çatalyürek; Jarek Nieplocha; P. Sadayappan (IPDPS, 2006)

Blue Gene system software - Design and implementation of a one-sided communication interface for the IBM eServer Blue Gene® supercomputer. - Michael Blocksome; Charles Archer; Todd Inglett; Patrick McCarthy; Michael B. Mundy; Joe Ratterman; A. Sidelnik; Brian E. Smith; George Almási 001; José G. Castaños; Derek Lieber; José E. Moreira; et al. (SC, 2006)

Data management and query - Hypergraph partitioning for automatic memory hierarchy management. - Sriram Krishnamoorthy; Ümit V. Çatalyürek; Jarek Nieplocha; Atanas Rountev; P. Sadayappan (SC, 2006)

M12 - Overview of the global arrays parallel software development toolkit. - Jarek Nieplocha; Bruce J. Palmer; Manojkumar Krishnan; P. Sadayappan (SC, 2006)

A Component Architecture for High-Performance Scientific Computing. - David E. Bernholdt; Benjamin A. Allan; Robert C. Armstrong; Felipe Bertrand; Kenneth Chiu; Tamara Dahlgren; Kostadin Damevski; Wael R. Elwasif; Thomas Epperly; Madhusudhan Govindaraju; Daniel S. Katz; James Arthur Kohl; et al. (Int. J. High Perform. Comput. Appl., 2006)

Advances, Applications and Performance of the Global Arrays Shared Memory Programming Toolkit. - Jarek Nieplocha; Bruce J. Palmer; Vinod Tipparaju; Manojkumar Krishnan; Harold Trease; Edoardo Aprà (Int. J. High Perform. Comput. Appl., 2006)

High Performance Remote Memory Access Communication: The Armci Approach. - Jarek Nieplocha; Vinod Tipparaju; Manojkumar Krishnan; Dhabaleswar K. Panda 001 (Int. J. High Perform. Comput. Appl., 2006)

SFT: scalable fault tolerance. - Fabrizio Petrini; Jarek Nieplocha; Vinod Tipparaju (ACM SIGOPS Oper. Syst. Rev., 2006)

Layout transformation support for the disk resident arrays framework. - Sriram Krishnamoorthy; Gerald Baumgartner; Chi-Chung Lam; Jarek Nieplocha; P. Sadayappan (J. Supercomput., 2006)

ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis. - Chris Oehmen; Jarek Nieplocha (IEEE Trans. Parallel Distributed Syst., 2006)

Evaluating the potential of multithreaded platforms for irregular scientific computations. - Jarek Nieplocha; Andrés Márquez 001; John Feo; Daniel G. Chavarría-Miranda; George Chin Jr.; Chad Scherrer; Nathaniel Beagley (Conf. Computing Frontiers, 2007)

Non-collective parallel I/O for global address space programming models. - Sriram Krishnamoorthy; Juan Piernas; Vinod Tipparaju; Jarek Nieplocha; P. Sadayappan (CLUSTER, 2007)

Transparent system-level migration of PGAS applications using Xen on InfiniBand. - Daniele Paolo Scarpazza; Patrick Mullaney; Oreste Villa; Fabrizio Petrini; Vinod Tipparaju; David M. L. Brown; Jarek Nieplocha (CLUSTER, 2007)

A global address space framework for locality aware scheduling of block-sparse computations. - Sriram Krishnamoorthy; Ümit V. Çatalyürek; Jarek Nieplocha; Atanas Rountev; P. Sadayappan (IPDPS, 2007)

Scalable Visual Analytics of Massive Textual Datasets. - Manojkumar Krishnan; S. Bohn; W. Cowley; Vernon L. Crow; Jarek Nieplocha (IPDPS, 2007)

Probability Convergence in a Multithreaded Counting Application. - Chad Scherrer; Nathaniel Beagley; Jarek Nieplocha; Andrés Márquez 001; John Feo; Daniel G. Chavarría-Miranda (IPDPS, 2007)

Evaluation of Remote Memory Access Communication on the Cray XT3. - Vinod Tipparaju; Andriy Kot; Jarek Nieplocha; Monika ten Bruggencate; Nikos Chrisochoides (IPDPS, 2007)

Towards Fault Resilient Global Arrays. - Vinod Tipparaju; Manojkumar Krishnan; Bruce J. Palmer; Fabrizio Petrini; Jarek Nieplocha (PARCO, 2007)

Evaluation of active storage strategies for the lustre parallel file system. - Juan Piernas; Jarek Nieplocha; Evan J. Felix (SC, 2007)

Using the GA and TAO toolkits for solving large-scale optimization problems on parallel computers. - Steven Benson; Manojkumar Krishnan; Lois C. McInnes; Jarek Nieplocha; Jason Sarich (ACM Trans. Math. Softw., 2007)

Efficient Management of Complex Striped Files in Active Storage. - Juan Piernas; Jarek Nieplocha (Euro-Par, 2008)

Integrated Data and Task Management for Scientific Applications. - Jarek Nieplocha; Sriram Krishnamoorthy; Marat Valiev; Manojkumar Krishnan; Bruce J. Palmer; P. Sadayappan (ICCS (1), 2008)

Scioto: A Framework for Global-View Task Parallelism. - James Dinan; Sriram Krishnamoorthy; D. Brian Larkins; Jarek Nieplocha; P. Sadayappan (ICPP, 2008)

Evaluation of Remote Memory Access Communication on the IBM Blue Gene/P Supercomputer. - Manojkumar Krishnan; Jarek Nieplocha; Michael Blocksome; Brian E. Smith (ICPP Workshops, 2008)

Early experience with out-of-core applications on the Cray XMT. - Daniel G. Chavarría-Miranda; Andrés Márquez 001; Jarek Nieplocha; Kristyn J. Maschhoff; Chad Scherrer (IPDPS, 2008)

A framework for characterizing overlap of communication and computation in parallel applications. - Aniruddha G. Shet; P. Sadayappan; David E. Bernholdt; Jarek Nieplocha; Vinod Tipparaju (Clust. Comput., 2008)

Scalable transparent checkpoint-restart of global address space applications on virtual machines over infiniband. - Oreste Villa; Sriram Krishnamoorthy; Jarek Nieplocha; David M. Brown Jr. (Conf. Computing Frontiers, 2009)

Scalable work stealing. - James Dinan; D. Brian Larkins; P. Sadayappan; Sriram Krishnamoorthy; Jarek Nieplocha (SC, 2009)

Design and implementation of a high-performance CCA event service. - Ian Gorton; Daniel G. Chavarría-Miranda; Jarek Nieplocha (Concurr. Comput. Pract. Exp., 2009)

NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations. - Marat Valiev; Eric J. Bylaska; Niranjan Govind; Karol Kowalski; Tjerk P. Straatsma; Hubertus Johannes Jacobus Van Dam; D. Wang; Jarek Nieplocha; Edoardo Aprà; Theresa L. Windus; Wibe A. de Jong (Comput. Phys. Commun., 2010)

Implementation and evaluation of active storage in modern parallel file systems. - Juan Piernas Cánovas; Jarek Nieplocha (Parallel Comput., 2010)

Global Arrays Parallel Programming Toolkit. - Jarek Nieplocha; Manojkumar Krishnan; Bruce J. Palmer; Vinod Tipparaju; Robert J. Harrison; Daniel G. Chavarría-Miranda (Encyclopedia of Parallel Computing, 2011)