Neighborhood Preservation in Nonlinear Projection Methods: An Experimental Study. - Jarkko Venna; Samuel Kaski (ICANN, 2001)

Analysis and visualization of gene expression data using Self-Organizing Maps. - Janne Nikkilä; Petri Törönen; Samuel Kaski; Jarkko Venna; Eero Castrén; Garry Wong (Neural Networks, 2002)

Visualizations for Assessing Convergence and Mixing of MCMC. - Jarkko Venna; Samuel Kaski; Jaakko Peltonen (ECML, 2003)

Trustworthiness and metrics in visualizing similarity of gene expression. - Samuel Kaski; Janne Nikkilä; Merja Oja; Jarkko Venna; Petri Törönen; Eero Castrén (BMC Bioinform., 2003)

Visualizing gene interaction graphs with local multidimensional scaling. - Jarkko Venna; Samuel Kaski (ESANN, 2006)

Local multidimensional scaling. - Jarkko Venna; Samuel Kaski (Neural Networks, 2006)

Comparison of visualization methods for an atlas of gene expression data sets. - Jarkko Venna; Samuel Kaski (Inf. Vis., 2007)

Nonlinear Dimensionality Reduction as Information Retrieval. - Jarkko Venna; Samuel Kaski (AISTATS, 2007)

Visualizations for assessing convergence and mixing of Markov chain Monte Carlo simulations. - Jaakko Peltonen; Jarkko Venna; Samuel Kaski (Comput. Stat. Data Anal., 2009)

Information Retrieval Perspective to Nonlinear Dimensionality Reduction for Data Visualization. - Jarkko Venna; Jaakko Peltonen; Kristian Nybo; Helena Aidos; Samuel Kaski (J. Mach. Learn. Res., 2010)