Proteochemometrics Modeling of Receptor-Ligand Interactions Using Rough Sets. - Helena Strömbergsson; Peteris Prusis; Herman Midelfart; Jarl E. S. Wikberg; Henryk Jan Komorowski (German Conference on Bioinformatics, 2004)

Improved approach for proteochemometrics modeling: application to organic compound - amine G protein-coupled receptor interactions. - Maris Lapinsh; Peteris Prusis; Staffan Uhlén; Jarl E. S. Wikberg (Bioinform., 2005)

Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling. - Eva Freyhult; Peteris Prusis; Maris Lapinsh; Jarl E. S. Wikberg; Vincent Moulton; Mats G. Gustafsson (BMC Bioinform., 2005)

Prediction of indirect interactions in proteins. - Peteris Prusis; Staffan Uhlén; Ramona Petrovska; Maris Lapinsh; Jarl E. S. Wikberg (BMC Bioinform., 2006)

Bioclipse: an open source workbench for chemo- and bioinformatics. - Ola Spjuth; Tobias Helmus; Egon L. Willighagen; Stefan Kuhn 001; Martin Eklund; Johannes Wagener; Peter Murray-Rust; Christoph Steinbeck; Jarl E. S. Wikberg (BMC Bioinform., 2007)

A Look Inside HIV Resistance through Retroviral Protease Interaction Maps. - Aleksejs Kontijevskis; Peteris Prusis; Ramona Petrovska; Sviatlana Yahorava; Felikss Mutulis; Ilze Mutule; Henryk Jan Komorowski; Jarl E. S. Wikberg (PLoS Comput. Biol., 2007)

The C1C2: A framework for simultaneous model selection and assessment. - Martin Eklund; Ola Spjuth; Jarl E. S. Wikberg (BMC Bioinform., 2008)

Proteochemometric modeling of HIV protease susceptibility. - Maris Lapins; Martin Eklund; Ola Spjuth; Peteris Prusis; Jarl E. S. Wikberg (BMC Bioinform., 2008)

Generalized Proteochemometric Model of Multiple Cytochrome P450 Enzymes and Their Inhibitors. - Aleksejs Kontijevskis; Jan Komorowski; Jarl E. S. Wikberg (J. Chem. Inf. Model., 2008)

Interaction Model Based on Local Protein Substructures Generalizes to the Entire Structural Enzyme-Ligand Space. - Helena Strömbergsson; Pawel Daniluk; Andriy Kryshtafovych; Krzysztof Fidelis; Jarl E. S. Wikberg; Gerard J. Kleywegt; Torgeir R. Hvidsten (J. Chem. Inf. Model., 2008)

Linking Open Drug Data to Cheminformatics and Proteochemometrics. - Egon L. Willighagen; Jarl E. S. Wikberg (SWAT4LS, 2009)

Bioclipse 2: A scriptable integration platform for the life sciences. - Ola Spjuth; Jonathan Alvarsson; Arvid Berg; Martin Eklund; Stefan Kuhn 001; Carl Mäsak; Gilleain M. Torrance; Johannes Wagener; Egon L. Willighagen; Christoph Steinbeck; Jarl E. S. Wikberg (BMC Bioinform., 2009)

XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services. - Johannes Wagener; Ola Spjuth; Egon L. Willighagen; Jarl E. S. Wikberg (BMC Bioinform., 2009)

Proteochemometric Modeling of Drug Resistance over the Mutational Space for Multiple HIV Protease Variants and Multiple Protease Inhibitors. - Maris Lapins; Jarl E. S. Wikberg (J. Chem. Inf. Model., 2009)

An eScience-Bayes strategy for analyzing omics data. - Martin Eklund; Ola Spjuth; Jarl E. S. Wikberg (BMC Bioinform., 2010)

Kinome-wide interaction modelling using alignment-based and alignment-independent approaches for kinase description and linear and non-linear data analysis techniques. - Maris Lapins; Jarl E. S. Wikberg (BMC Bioinform., 2010)

Towards interoperable and reproducible QSAR analyses: Exchange of datasets. - Ola Spjuth; Egon L. Willighagen; Rajarshi Guha; Martin Eklund; Jarl E. S. Wikberg (J. Cheminformatics, 2010)

Services for prediction of drug susceptibility for HIV proteases and reverse transcriptases at the HIV drug research centre. - Ola Spjuth; Martin Eklund; Maris Lapins; Muhammad Junaid; Jarl E. S. Wikberg (Bioinform., 2011)

Linking the Resource Description Framework to cheminformatics and proteochemometrics. - Egon L. Willighagen; Jonathan Alvarsson; Annsofie Andersson; Martin Eklund; Samuel Lampa; Maris Lapins; Ola Spjuth; Jarl E. S. Wikberg (J. Biomed. Semant., 2011)

Brunn: An open source laboratory information system for microplates with a graphical plate layout design process. - Jonathan Alvarsson; Claes R. Andersson; Ola Spjuth; Rolf Larsson; Jarl E. S. Wikberg (BMC Bioinform., 2011)

Bioclipse-R: integrating management and visualization of life science data with statistical analysis. - Ola Spjuth; Valentin Georgiev; Lars Carlsson; Jonathan Alvarsson; Arvid Berg; Egon L. Willighagen; Jarl E. S. Wikberg; Martin Eklund (Bioinform., 2013)

Illuminating the origins of spectral properties of green fluorescent proteins via proteochemometric and molecular modeling. - Chanin Nantasenamat; Saw Simeon; Wiwat Owasirikul; Napat Songtawee; Maris Lapins; Virapong Prachayasittikul; Jarl E. S. Wikberg (J. Comput. Chem., 2014)

Benchmarking Study of Parameter Variation When Using Signature Fingerprints Together with Support Vector Machines. - Jonathan Alvarsson; Martin Eklund; Claes R. Andersson; Lars Carlsson; Ola Spjuth; Jarl E. S. Wikberg (J. Chem. Inf. Model., 2014)

Ligand-Based Target Prediction with Signature Fingerprints. - Jonathan Alvarsson; Martin Eklund; Ola Engkvist; Ola Spjuth; Lars Carlsson; Jarl E. S. Wikberg; Tobias Noeske (J. Chem. Inf. Model., 2014)

Proteochemometric model for predicting the inhibition of penicillin-binding proteins. - Sunanta Nabu; Chanin Nantasenamat; Wiwat Owasirikul; Ratana Lawung; Chartchalerm Isarankura-Na-Ayudhya; Maris Lapins; Jarl E. S. Wikberg; Virapong Prachayasittikul (J. Comput. Aided Mol. Des., 2015)

Large-scale ligand-based predictive modelling using support vector machines. - Jonathan Alvarsson; Samuel Lampa; Wesley Schaal; Claes R. Andersson; Jarl E. S. Wikberg; Ola Spjuth (J. Cheminformatics, 2016)

osFP: a web server for predicting the oligomeric states of fluorescent proteins. - Saw Simeon; Watshara Shoombuatong; Nuttapat Anuwongcharoen; Likit Preeyanon; Virapong Prachayasittikul; Jarl E. S. Wikberg; Chanin Nantasenamat (J. Cheminformatics, 2016)