Building online genomics applications using BioPyramid. - Liam Stephenson; Yoshua Wakeham; Nick Seidenman; Jarny Choi (Bioinform., 2018)

Haemopedia RNA-seq: a database of gene expression during haematopoiesis in mice and humans. - Jarny Choi; Tracey M. Baldwin; Mae Wong; Jessica E. Bolden; Kirsten A. Fairfax; Erin C. Lucas; Rebecca Cole; Christine Biben; Clare Morgan; Kerry A. Ramsay; Ashley P. Ng; Maria Kauppi; et al. (Nucleic Acids Res., 2019)

Stemformatics: visualize and download curated stem cell data. - Jarny Choi; Chris M. Pacheco; Rowland Mosbergen; Othmar Korn; Tyrone Chen; Isha Nagpal; Steve Englart; Paul W. Angel; Christine A. Wells (Nucleic Acids Res., 2019)

A simple, scalable approach to building a cross-platform transcriptome atlas. - Paul W. Angel; Nadia Rajab; Yidi Deng; Chris M. Pacheco; Tyrone Chen; Kim-Anh Lê Cao; Jarny Choi; Christine A. Wells (PLoS Comput. Biol., 2020)

Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references. - Yidi Deng; Jarny Choi; Kim-Anh Lê Cao (Briefings Bioinform., 2022)