Slow EEG pattern predicts reduced intrinsic functional connectivity in the default mode network: An inter-subject analysis. - Jaroslav Hlinka; Charilaos Alexakis; Ana Diukova; Peter F. Liddle; Dorothee Auer (NeuroImage, 2010)

Functional connectivity in resting-state fMRI: Is linear correlation sufficient? - Jaroslav Hlinka; Milan Palus; Martin Vejmelka; Dante Mantini; Maurizio Corbetta (NeuroImage, 2011)

Small-world topology of functional connectivity in randomly connected dynamical systems - Jaroslav Hlinka; David Hartman; Milan Palus (CoRR, 2012)

Reliability of Inference of Directed Climate Networks Using Conditional Mutual Information. - Jaroslav Hlinka; David Hartman; Martin Vejmelka; Jakob Runge; Norbert Marwan; Jürgen Kurths; Milan Palus (Entropy, 2013)

On the danger of detecting network states in white noise. - Jaroslav Hlinka; Michal Hadrava (Frontiers Comput. Neurosci., 2015)

Highly Robust Classification: A Regularized Approach for Omics Data. - Jan Kalina; Jaroslav Hlinka (BIOINFORMATICS, 2016)

Implicitly Weighted Robust Classification Applied to Brain Activity Research. - Jan Kalina; Jaroslav Hlinka (BIOSTEC (Selected Papers), 2016)

BRAD: Software for BRain Activity Detection from hemodynamic response. - Anna Pidnebesna; David Tomecek; Jaroslav Hlinka (Comput. Methods Programs Biomed., 2018)

Causal network discovery by iterative conditioning: comparison of algorithms. - Jaroslav Hlinka; Jakub Korenek (CoRR, 2018)

Nonlinearity in stock networks. - David Hartman; Jaroslav Hlinka (CoRR, 2018)

Quantifying the Variability in Resting-State Networks. - Isaura Oliver; Jaroslav Hlinka; Jakub Kopal; Jörn Davidsen (Entropy, 2019)

Residual Predictive Information Flow in the Tight Coupling Limit: Analytic Insights from a Minimalistic Model. - Benjamin Wahl; Ulrike Feudel; Jaroslav Hlinka; Matthias Wächter; Joachim Peinke; Jan A. Freund (Entropy, 2019)

A Dynamical Systems Approach to Spectral Music: Modeling the Role of Roughness and Inharmonicity in Perception of Musical Tension. - Michal Hadrava; Jaroslav Hlinka (Frontiers Appl. Math. Stat., 2020)

Electrical Source Imaging in Freely Moving Rats: Evaluation of a 12-Electrode Cortical Electroencephalography System. - Stanislav Jiricek; Vlastimil Koudelka; Jaroslav Lacik; Cestmir Vejmola; David Kuratko; Daniel K. Wójcik; Zbynek Raida; Jaroslav Hlinka; Tomas Palenicek (Frontiers Neuroinformatics, 2020)

Causality in Reversed Time Series: Reversed or Conserved? - Jakub Korenek; Jaroslav Hlinka (Entropy, 2021)

Promises and pitfalls of topological data analysis for brain connectivity analysis. - Luigi Caputi; Anna Pidnebesna; Jaroslav Hlinka (NeuroImage, 2021)

Perturbations both trigger and delay seizures due to generic properties of slow-fast relaxation oscillators. - Alberto Pérez-Cervera; Jaroslav Hlinka (PLoS Comput. Biol., 2021)

Brain Functional Connectivity Asymmetry: Left Hemisphere Is More Modular. - Lucia Jajcay; David Tomecek; Jirí Horácek; Filip Spaniel; Jaroslav Hlinka (Symmetry, 2022)

Computing approximate symmetries of complex networks. - Anna Pidnebesna; David Hartman; Aneta Pokorná; Matej Straka; Jaroslav Hlinka (CoRR, 2023)

Towards a dynamical understanding of microstate analysis of M/EEG data. - Nikola Jajcay; Jaroslav Hlinka (NeuroImage, 2023)

Towards Definition of Higher Order Causality in Complex Systems. - Jakub Korenek; Pavel Sanda; Jaroslav Hlinka (CoRR, 2024)

Cholinergic modulation supports dynamic switching of resting state networks through selective DMN suppression. - Pavel Sanda; Jaroslav Hlinka; Monica van den Berg; Antonín Skoch; Maxim Bazhenov; Georgios A. Keliris; Giri P. Krishnan (PLoS Comput. Biol., 2024)

Response prediction of antidepressants: Using graph theory tools for brain network connectivity analysis. - Akbar Davoodi; Martin Holena; Martin Brunovsky; Aditi Kathpalia; Jaroslav Hlinka; Martin Bares; Milan Palus (Biomed. Signal Process. Control., 2025)

Local iterative algorithms for approximate symmetry guided by network centralities. - David Hartman; Jaroslav Hlinka; Anna Pidnebesna; Frantisek Szczepanik (CoRR, 2025)