Maximum feasibility guideline in the design and analysis of protein folding potentials. - Jaroslaw Meller; Michael Wagner 010; Ron Elber (J. Comput. Chem., 2002)

POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins. - Aleksey A. Porollo; Rafal Adamczak; Jaroslaw Meller (Bioinform., 2004)

Large-scale linear programming techniques for the design of protein folding potentials. - Michael Wagner 010; Jaroslaw Meller; Ron Elber (Math. Program., 2004)

Linear Regression Models for Solvent Accessibility Prediction in Proteins. - Michael Wagner 010; Rafal Adamczak; Aleksey A. Porollo; Jaroslaw Meller (J. Comput. Biol., 2005)

Enhanced recognition of protein transmembrane domains with prediction-based structural profiles. - Baoqiang Cao; Aleksey A. Porollo; Rafal Adamczak; Mark Jarrell; Jaroslaw Meller (Bioinform., 2006)

Biases in Lipid Accessibility Prediction Can Be Used for the Recognition of Protein Interaction Interfaces in Soluble Proteins. - Aleksey A. Porollo; Baoqiang Cao; Jaroslaw Meller (BIOCOMP, 2007)

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D. - Aleksey A. Porollo; Jaroslaw Meller (BMC Bioinform., 2007)

Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms. - Amit U. Sinha; Jaroslaw Meller (BMC Bioinform., 2007)

Sensitivity Analysis for Reversal Distance and Breakpoint Reuse in Genome Rearrangements. - Amit U. Sinha; Jaroslaw Meller (Pacific Symposium on Biocomputing, 2008)

Entropic Force in Drosophila Resilin: Molecular Dynamics Study. - Roman Petrenko; Matthew Dickerson; Rajesh Naik; Soumya Patnaik; Thomas Beck; Jaroslaw Meller (BIOCOMP, 2009)

Assessment of One- and Two-Class SVMs in the Prediction of Phosphorylation in Proteins. - Karthikeyan Swaminathan; Jaroslaw Meller (BIOCOMP, 2009)

Model Quality Assessment in Membrane Proteins Using predicted Lipid Accessibility Profiles. - Mukta Phatak; Jaroslaw Meller (ISAIM, 2010)

POLYVIEW-MM: web-based platform for animation and analysis of molecular simulations. - Aleksey A. Porollo; Jaroslaw Meller (Nucleic Acids Res., 2010)

Fast Geometric Consensus Approach for Protein Model Quality Assessment. - Rafal Adamczak; Jaroslaw Pillardy; Brinda K. Vallat; Jaroslaw Meller (J. Comput. Biol., 2011)

Computational Approach to Understanding autism Spectrum disorders. - Wlodzislaw Duch; Wieslaw Nowak; Jaroslaw Meller; Grzegorz Osinski; Krzysztof Dobosz; Dariusz Mikolajewski; Grzegorz M. Wójcik (Comput. Sci., 2012)

Identifying a small set of marker genes using minimum expected cost of misclassification. - Samuel H. Huang; Dengyao Mo; Jarek Meller; Michael Wagner 010 (Artif. Intell. Medicine, 2012)

UQlust: combining profile hashing with linear-time ranking for efficient clustering and analysis of big macromolecular data. - Rafal Adamczak; Jarek Meller (BMC Bioinform., 2016)

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. - Amar Koleti; Raymond Terryn; Vasileios Stathias; Caty Chung; Daniel J. Cooper; John Paul Turner; Dusica Vidovic; Michele Forlin; Tanya T. Kelley; Alessandro D'Urso; Bryce K. Allen; Denis Torre; et al. (Nucleic Acids Res., 2018)

piNET: a versatile web platform for downstream analysis and visualization of proteomics data. - Behrouz Shamsaei; Szymon Chojnacki; Marcin Pilarczyk; Mehdi Fazel-Najafabadi; Wen Niu; Chuming Chen; Karen Ross; Andrea Matlock; Jeremy Muhlich; Somchai Chutipongtanate; Jie Zheng 001; John Turner; et al. (Nucleic Acids Res., 2020)