Surmounting the Multiple-Minima Problem in Protein Folding. - Harold A. Scheraga; Jooyoung Lee 002; Jaroslaw Pillardy; Yuan-Jie Ye; Adam Liwo; Daniel R. Ripoll (J. Glob. Optim., 1999)

UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. - Adam Liwo; Jaroslaw Pillardy; Cezary Czaplewski; Jooyoung Lee 002; Daniel R. Ripoll; Malgorzata Groth; Sylwia Rodziewicz-Motowidlo; Rajmund Kazmierkiewicz; Ryszard J. Wawak; Stanislaw Oldziej; Harold A. Scheraga (RECOMB, 2000)

Evolution of physics-based methodology for exploring the conformational energy landscape of proteins. - Harold A. Scheraga; Jaroslaw Pillardy; Adam Liwo; Jooyoung Lee 002; Cezary Czaplewski; Daniel R. Ripoll; William J. Wedemeyer; Yelena A. Arnautova (J. Comput. Chem., 2002)

Support Vector Training of Protein Alignment Models. - Chun-Nam John Yu; Thorsten Joachims; Ron Elber; Jaroslaw Pillardy (J. Comput. Biol., 2008)

Fast Geometric Consensus Approach for Protein Model Quality Assessment. - Rafal Adamczak; Jaroslaw Pillardy; Brinda K. Vallat; Jaroslaw Meller (J. Comput. Biol., 2011)