GeneWeaver: a web-based system for integrative functional genomics. - Erich J. Baker; Jeremy J. Jay; Jason A. Bubier; Michael A. Langston; Elissa J. Chesler (Nucleic Acids Res., 2012)

Scalable multipartite subgraph enumeration for integrative analysis of heterogeneous experimental functional genomics data. - Charles A. Phillips; Kai Wang; Jason A. Bubier; Erich J. Baker; Elissa J. Chesler; Michael A. Langston (BCB, 2015)

GeneWeaver: data driven alignment of cross-species genomics in biology and disease. - Erich J. Baker; Jason A. Bubier; Timothy Reynolds; Michael A. Langston; Elissa J. Chesler (Nucleic Acids Res., 2016)

On Finding and Enumerating Maximal and Maximum k-Partite Cliques in k-Partite Graphs. - Charles A. Phillips; Kai Wang; Erich J. Baker; Jason A. Bubier; Elissa J. Chesler; Michael A. Langston (Algorithms, 2019)

Curating gene sets: challenges and opportunities for integrative analysis. - Jason A. Bubier; David P. Hill; Gaurab Mukherjee; Timothy Reynolds; Erich J. Baker; Alexander Berger; Jake Emerson; Judith A. Blake; Elissa J. Chesler (Database J. Biol. Databases Curation, 2019)

Gridded Visualization of Statistical Trees for High-Dimensional Multipartite Data in Systems Genetics. - Jane Lydia Adams; Robyn L. Ball; Jason A. Bubier; Elissa J. Chesler; Melanie Tory; Michelle A. Borkin (Comput. Graph. Forum, 2025)