Active substrates for optoelectronic interconnect. - Donald M. Chiarulli; Steven P. Levitan; Jason D. Bakos; Charlie Kuznia (ISCAS (5), 2004)

Area, power, and pin efficient bus transceiver using multi-bit-differential signaling. - Donald M. Chiarulli; Jason D. Bakos; Joel R. Martin; Steven P. Levitan (ISCAS (2), 2005)

A Reconfigurable Distributed Computing Fabric Exploiting Multilevel Parallelism. - Charles L. Cathey; Jason D. Bakos; Duncan A. Buell (FCCM, 2006)

Predictive Load Balancing for Interconnected FPGAs. - Jason D. Bakos; Charles L. Cathey; Allen Michalski (FPL, 2006)

FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data. - Jason D. Bakos; Panormitis E. Elenis; Jijun Tang (BIBE, 2007)

FPGA Acceleration of Gene Rearrangement Analysis. - Jason D. Bakos (FCCM, 2007)

Lightweight Error Correction Coding for System-Level Interconnects. - Jason D. Bakos; Donald M. Chiarulli; Steven P. Levitan (IEEE Trans. Computers, 2007)

A Special-Purpose Architecture for Solving the Breakpoint Median Problem. - Jason D. Bakos; Panormitis E. Elenis (IEEE Trans. Very Large Scale Integr. Syst., 2008)

Exploiting Matrix Symmetry to Improve FPGA-Accelerated Conjugate Gradient. - Jason D. Bakos; Krishna K. Nagar (FCCM, 2009)

An integrated reduction technique for a double precision accumulator. - Krishna K. Nagar; Yan Zhang; Jason D. Bakos (HPRCTA@SC, 2009)

FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods. - Stephanie Zierke; Jason D. Bakos (BMC Bioinform., 2010)

High-Performance Heterogeneous Computing with the Convey HC-1. - Jason D. Bakos (Comput. Sci. Eng., 2010)

Frequent Itemset Mining on Large-Scale Shared Memory Machines. - Yan Zhang; Fan Zhang; Jason D. Bakos (CLUSTER, 2011)

GPApriori: GPU-Accelerated Frequent Itemset Mining. - Fan Zhang; Yan Zhang; Jason D. Bakos (CLUSTER, 2011)

A Sparse Matrix Personality for the Convey HC-1. - Krishna K. Nagar; Jason D. Bakos (FCCM, 2011)

A Cluster-on-a-Chip Architecture for High-Throughput Phylogeny Search. - Tiffany M. Mintz; Jason D. Bakos (IEEE Trans. Parallel Distributed Syst., 2012)

Sparse matrix-vector multiply on the Texas Instruments C6678 Digital Signal Processor. - Yang Gao; Jason D. Bakos (ASAP, 2013)

Memory Access Scheduling on the Convey HC-1. - Zheming Jin; Jason D. Bakos (FCCM, 2013)

Accuracy, cost, and performance tradeoffs for floating-point accumulation. - Krishna K. Nagar; Jason D. Bakos (ReConFig, 2013)

Extending the BEAGLE library to a multi-FPGA platform. - Zheming Jin; Jason D. Bakos (BMC Bioinform., 2013)

A Heuristic Scheduler for Port-Constrained Floating-Point Pipelines. - Zheming Jin; Jason D. Bakos (Int. J. Reconfigurable Comput., 2013)

Accelerating frequent itemset mining on graphics processing units. - Fan Zhang; Yan Zhang; Jason D. Bakos (J. Supercomput., 2013)

An FPGA-Based Accelerator for Frequent Itemset Mining. - Yan Zhang; Fan Zhang; Zheming Jin; Jason D. Bakos (ACM Trans. Reconfigurable Technol. Syst., 2013)

Sparse matrix-vector multiply on the Keystone II Digital Signal Processor. - Yang Gao; Fan Zhang; Jason D. Bakos (HPEC, 2014)

Lucas-Kanade Optical Flow estimation on the TI C66x digital signal processor. - Fan Zhang; Yang Gao; Jason D. Bakos (HPEC, 2014)

Large-Scale Pairwise Sequence Alignments on a Large-Scale GPU Cluster. - I. Savran; Yang Gao; Jason D. Bakos (IEEE Des. Test, 2014)

Memory Interface Design for 3D Stencil Kernels on a Massively Parallel Memory System. - Zheming Jin; Jason D. Bakos (ACM Trans. Reconfigurable Technol. Syst., 2015)

Two-Hit Filter Synthesis for Genomic Database Search. - Jordan A. Bradshaw; Rasha Karakchi; Jason D. Bakos (FCCM, 2016)

High-level synthesis of a genomic database search engine. - Rasha Karakchi; Jordan A. Bradshaw; Jason D. Bakos (ReConFig, 2016)

A Dynamically Reconfigurable Automata Processor Overlay. - Rasha Karakchi; Lothrop O. Richards; Jason D. Bakos (ReConFig, 2017)

Introduction to the Special Section on FCCM'16. - Jason D. Bakos (ACM Trans. Reconfigurable Technol. Syst., 2018)

OpenVX Graph Optimization for Visual Processor Units. - Madushan Abeysinghe; Jesse Villarreal; Lucas Weaver; Jason D. Bakos (ASAP, 2019)

An Overlay Architecture for Pattern Matching. - Rasha Karakchi; Charles Daniels; Jason D. Bakos (ASAP, 2019)

High-Rate Machine Learning for Forecasting Time-Series Signals. - Atiyehsadat Panahi; Ehsan Kabir; Austin R. J. Downey; David Andrews 001; Miaoqing Huang; Jason D. Bakos (FCCM, 2022)

Making BRAMs Compute: Creating Scalable Computational Memory Fabric Overlays. - M. D. Arafat Kabir; Joshua Hollis; Atiyehsadat Panahi; Jason D. Bakos; Miaoqing Huang; David Andrews 001 (FCCM, 2023)

Accelerating LSTM-Based High-Rate Dynamic System Models. - Ehsan Kabir; Daniel Coble; Joud N. Satme; Austin R. J. Downey; Jason D. Bakos; David Andrews 001; Miaoqing Huang (FPL, 2023)

FPGA Processor In Memory Architectures (PIMs): Overlay or Overhaul ? - M. D. Arafat Kabir; Ehsan Kabir; Joshua Hollis; Eli Levy-Mackay; Atiyehsadat Panahi; Jason D. Bakos; Miaoqing Huang; David Andrews 001 (FPL, 2023)

Optimal Sampling Methodologies for High-rate Structural Twinning. - Alexander B. Vereen; Emmanuel A. Ogunniyi; Austin R. J. Downey; Erik Blasch; Jason D. Bakos; Jacob Dodson (FUSION, 2023)

NAPOLY: A Non-deterministic Automata Processor OverLaY. - Rasha Karakchi; Jason D. Bakos (ACM Trans. Reconfigurable Technol. Syst., 2023)

Earthen Embankment Monitoring Using LiDAR Data by Randomized Consensus of Topological Data Analysis. - Austin R. J. Downey; Jie Wei; A. Q. M. Zohuruzzaman; Paul T. Schrader; Sadik Khan; Jason D. Bakos; Weicong Feng; Erik Blasch; Erika Ardiles-Cruz (DDDAS/Infosymbiotics, 2024)

Fast Topological Data Analysis Features for Nonstationary Time Series. - Daniel A. Salazar Martinez; Arman Razmarashooli; Yang Kang Chua; Simon Laflamme; Chao Hu; Paul T. Schrader; Austin R. J. Downey; Jason D. Bakos; Negash Begashaw; Gurcan Comert; Jacob Dodson (DDDAS/Infosymbiotics, 2024)

The BRAM is the Limit: Shattering Myths, Shaping Standards, and Building Scalable PIM Accelerators. - M. D. Arafat Kabir; Tendayi Kamucheka; Nathaniel Fredricks; Joel Mandebi; Jason D. Bakos; Miaoqing Huang; David Andrews 001 (FCCM, 2024)

IMAGine: An In-Memory Accelerated GEMV Engine Overlay. - M. D. Arafat Kabir; Tendayi Kamucheka; Nathaniel Fredricks; Joel Mandebi; Jason D. Bakos; Miaoqing Huang; David Andrews 001 (FPL, 2024)

Famous: Flexible Accelerator for the Attention Mechanism of Transformer on Ultrascale+ FPGAs. - Ehsan Kabir; M. D. Arafat Kabir; Austin R. J. Downey; Jason D. Bakos; David Andrews 001; Miaoqing Huang (ICFPT, 2024)

ProTEA: Programmable Transformer Encoder Acceleration on FPGA. - Ehsan Kabir; Jason D. Bakos; David Andrews 001; Miaoqing Huang (SC Workshops, 2024)

XbarSim: A Decomposition-Based Memristive Crossbar Simulator. - Anzhelika Kolinko; Md Hasibul Amin; Ramtin Zand; Jason D. Bakos (CoRR, 2024)

A Runtime-Adaptive Transformer Neural Network Accelerator on FPGAs. - Ehsan Kabir; Austin R. J. Downey; Jason D. Bakos; David Andrews 001; Miaoqing Huang (CoRR, 2024)

Introduction to the Special Section on FPGA 2023. - Suhaib A. Fahmy; Jason D. Bakos (ACM Trans. Reconfigurable Technol. Syst., 2024)

Optimized Coding and Parameter Selection for Efficient FPGA Design of Attention Mechanisms. - Ehsan Kabir; Austin R. J. Downey; Jason D. Bakos; David Andrews 001; Miaoqing Huang (FCCM, 2025)

N-TORC: Native Tensor Optimizer for Real-Time Constraints. - Suyash Vardhan Singh; Iftakhar Ahmad; David Andrews 001; Miaoqing Huang; Austin R. J. Downey; Jason D. Bakos (FCCM, 2025)

Resource Scheduling for Real-Time Machine Learning. - Suyash Vardhan Singh; Iftakhar Ahmad; David Andrews 001; Miaoqing Huang; Austin R. J. Downey; Jason D. Bakos (FPGA, 2025)

CrossNAS: A Cross-Layer Neural Architecture Search Framework for PIM Systems. - Md Hasibul Amin; Mohammadreza Mohammadi; Jason D. Bakos; Ramtin Zand (ACM Great Lakes Symposium on VLSI, 2025)

A Decomposition-Based Memristive Crossbar Solver and FPGA-Accelerated Hardware Implementation. - Suyash Vardhan Singh; Anzhelika Kolinko; Md Hasibul Amin; Ramtin Zand; Jason D. Bakos (ACM Great Lakes Symposium on VLSI, 2025)