Immune epitope database analysis resource (IEDB-AR). - Qing Zhang; Peng Wang 014; Yohan Kim; Pernille Haste-Andersen; John E. Beaver; Philip E. Bourne; Huynh-Hoa Bui; Søren Buus; Sune Frankild; Jason Greenbaum; Ole Lund; Claus Lundegaard; et al. (Nucleic Acids Res., 2008)

The Immune Epitope Database 2.0. - Randi Vita; Laura Zarebski; Jason Greenbaum; Hussein Emami; Ilka Hoof; Nima Salimi; Rohini Damle; Alessandro Sette; Björn Peters (Nucleic Acids Res., 2010)

Immune epitope database analysis resource. - Yohan Kim; Julia V. Ponomarenko; Zhanyang Zhu; Dorjee Tamang; Peng Wang 014; Jason Greenbaum; Claus Lundegaard; Alessandro Sette; Ole Lund; Philip E. Bourne; Morten Nielsen 001; Bjoern Peters (Nucleic Acids Res., 2012)

A Taxonomy for Immunologists. - James A. Overton; Randi Vita; Jason Greenbaum; Heiko Dietze; Alessandro Sette; Bjoern Peters (ICBO, 2013)

Query enhancement through the practical application of ontology: the IEDB and OBI. - Randi Vita; James A. Overton; Jason Greenbaum; Alessandro Sette; Björn Peters (J. Biomed. Semant., 2013)

Properties of MHC Class I Presented Peptides That Enhance Immunogenicity. - Jorg J. A. Calis; Matt Maybeno; Jason A. Greenbaum; Daniela Weiskopf; Aruna D. De Silva; Alessandro Sette; Can Kesmir; Björn Peters (PLoS Comput. Biol., 2013)

The interplay of sequence conservation and T cell immune recognition. - Anne Bresciani; Jason Greenbaum; Cecilia S. Lindestam Arlehamn; Alessandro Sette; Morten Nielsen 001; Bjoern Peters (BCB, 2014)

Automated benchmarking of peptide-MHC class I binding predictions. - Thomas Trolle; Imir G. Metushi; Jason A. Greenbaum; Yohan Kim; John Sidney; Ole Lund; Alessandro Sette; Bjoern Peters; Morten Nielsen 001 (Bioinform., 2015)

The immune epitope database (IEDB) 3.0. - Randi Vita; James A. Overton; Jason A. Greenbaum; Julia V. Ponomarenko; Jason D. Clark; Jason R. Cantrell; Daniel K. Wheeler; Joseph L. Gabbard; Deborah Hix; Alessandro Sette; Bjoern Peters (Nucleic Acids Res., 2015)

An automated benchmarking platform for MHC class II binding prediction methods. - Massimo Andreatta; Thomas Trolle; Zhen Yan; Jason A. Greenbaum; Bjoern Peters; Morten Nielsen 001 (Bioinform., 2018)

IEDB-AR: immune epitope database - analysis resource in 2019. - Sandeep Kumar Dhanda; Swapnil Mahajan; Sinu Paul; Zhen Yan; Haeuk Kim; Martin Closter Jespersen; Vanessa Isabell Jurtz; Massimo Andreatta; Jason A. Greenbaum; Paolo Marcatili; Alessandro Sette; Morten Nielsen 001; et al. (Nucleic Acids Res., 2019)

A comprehensive analysis of the IEDB MHC class-I automated benchmark. - Raphael Trevizani; Zhen Yan; Jason A. Greenbaum; Alessandro Sette; Morten Nielsen 001; Bjoern Peters (Briefings Bioinform., 2022)

Towards the prediction of non-peptidic epitopes. - Paul F. Zierep; Randi Vita; Nina Blazeska; Aurélien F. A. Moumbock; Jason A. Greenbaum; Bjoern Peters; Stefan Günther (PLoS Comput. Biol., 2022)

Coronavirus Immunotherapeutic Consortium Database. - Jarjapu Mahita; Brendan Ha; Anais Gambiez; Sharon L. Schendel; Haoyang Li; Kathryn M. Hastie; S. Moses Dennison; Kan Li; Natalia Kuzmina; Sivakumar Periasamy; Alexander Bukreyev; Jennifer E. Munt; et al. (Database J. Biol. Databases Curation, 2023)

PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins. - Daniel Marrama; William D. Chronister; Luise Westernberg; Randi Vita; Zeynep Kosaloglu-Yalçin; Alessandro Sette; Morten Nielsen 001; Jason A. Greenbaum; Bjoern Peters (BMC Bioinform., 2023)

The receiver operating characteristic curve accurately assesses imbalanced datasets. - Eve Richardson; Raphael Trevizani; Jason A. Greenbaum; Hannah Carter; Morten Nielsen 001; Bjoern Peters (Patterns, 2024)

Putting computational models of immunity to the test - An invited challenge to predict B.pertussis vaccination responses. - Pramod Shinde; Lisa Willemsen; Michael Anderson; Minori Aoki; Saonli Basu; Julie G. Burel; Peng Cheng; Souradipto Ghosh Dastidar; Aidan Dunleavy; Tal Einav; Jamie Forschmiedt; Slim Fourati; et al. (PLoS Comput. Biol., 2025)