Ergatis: a web interface and scalable software system for bioinformatics workflows. - Joshua Orvis; Jonathan Crabtree; Kevin Galens; Aaron Gussman; Jason M. Inman; Eduardo Lee; Sreenath Nampally; David R. Riley 002; Jaideep P. Sundaram; Victor Felix; Brett Whitty; Anup Mahurkar; et al. (Bioinform., 2010)

Pathema: a clade-specific bioinformatics resource center for pathogen research. - Lauren M. Brinkac; Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Elisabet Caler; Robert J. Dodson; A. Scott Durkin; Derek M. Harkins; Hernan Lorenzi; Ramana Madupu; Yinong Sebastian; Susmita Shrivastava; et al. (Nucleic Acids Res., 2010)

LOCUST: a custom sequence locus typer for classifying microbial isolates. - Lauren M. Brinkac; Erin Beck; Jason M. Inman; Pratap Venepally; Derrick E. Fouts; Granger G. Sutton (Bioinform., 2017)

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes. - Thomas H. Clarke; Lauren M. Brinkac; Jason M. Inman; Granger G. Sutton; Derrick E. Fouts (BMC Bioinform., 2018)

Large-scale comparative analysis of microbial pan-genomes using PanOCT. - Jason M. Inman; Granger G. Sutton; Erin Beck; Lauren M. Brinkac; Thomas H. Clarke; Derrick E. Fouts (Bioinform., 2019)