Attractor estimation and model refinement for stochastic regulatory network models. - Jason M. Knight; Edward R. Dougherty (GENSiPS, 2011)

Generating Stochastic Gene Regulatory Networks Consistent With Pathway Information and Steady-State Behavior. - Jason M. Knight; Aniruddha Datta; Edward R. Dougherty (IEEE Trans. Biomed. Eng., 2012)

Bayesian multivariate Poisson model for RNA-seq classification. - Jason M. Knight; Ivan Ivanov 001; Edward R. Dougherty (GENSiPS, 2013)

Classifier design given an uncertainty class of feature distributions via regularized maximum likelihood and the incorporation of biological pathway knowledge in steady-state phenotype classification. - Mohammad Shahrokh Esfahani; Jason M. Knight; Amin Zollanvari; Byung-Jun Yoon; Edward R. Dougherty (Pattern Recognit., 2013)

MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification. - Jason M. Knight; Ivan Ivanov 001; Edward R. Dougherty (BMC Bioinform., 2014)

Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification. - Jason M. Knight; Ivan Ivanov 001; Karen Triff; Robert S. Chapkin; Edward R. Dougherty (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)