Whole-brain voxel-based statistical analysis of gray matter and white matter in temporal lobe epilepsy. - Neda Bernasconi; Simon Duchesne; Andrew L. Janke; Jason P. Lerch; D. Louis Collins; Andrea Bernasconi (NeuroImage, 2004)

Connectivity of anatomical and functional MRI data. - Keith J. Worsley; Arnaud Charil; Jason P. Lerch; Alan C. Evans (IJCNN, 2005)

Automated 3-D extraction and evaluation of the inner and outer cortical surfaces using a Laplacian map and partial volume effect classification. - June Sic Kim; Vivek Singh; Jun Ki Lee; Jason P. Lerch; Yasser Ad-Dab'bagh; David MacDonald; Jong-Min Lee; Sun I. Kim; Alan C. Evans (NeuroImage, 2005)

Cortical thickness analysis examined through power analysis and a population simulation. - Jason P. Lerch; Alan C. Evans (NeuroImage, 2005)

Mapping anatomical correlations across cerebral cortex (MACACC) using cortical thickness from MRI. - Jason P. Lerch; Keith J. Worsley; W. Philip Shaw; Deanna K. Greenstein; Rhoshel K. Lenroot; Jay N. Giedd; Alan C. Evans (NeuroImage, 2006)

Focal cortical atrophy in multiple sclerosis: Relation to lesion load and disability. - Arnaud Charil; Alain Dagher; Jason P. Lerch; Alex P. Zijdenbos; Keith J. Worsley; Alan C. Evans (NeuroImage, 2007)

Sexual dimorphism of brain developmental trajectories during childhood and adolescence. - Rhoshel K. Lenroot; Nitin Gogtay; Deanna K. Greenstein; Elizabeth Molloy Wells; Gregory L. Wallace; Liv S. Clasen; Jonathan D. Blumenthal; Jason P. Lerch; Alex P. Zijdenbos; Alan C. Evans; Paul M. Thompson; Jay N. Giedd (NeuroImage, 2007)

Sexual dimorphism revealed in the structure of the mouse brain using three-dimensional magnetic resonance imaging. - Shoshana Spring; Jason P. Lerch; R. Mark Henkelman (NeuroImage, 2007)

Mapping limbic network organization in temporal lobe epilepsy using morphometric correlations: Insights on the relation between mesiotemporal connectivity and cortical atrophy. - Boris C. Bernhardt; Keith J. Worsley; Pierre Besson; Luis Concha; Jason P. Lerch; Alan C. Evans; Neda Bernasconi (NeuroImage, 2008)

High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice. - A. E. Dorr; Jason P. Lerch; Shoshana Spring; Noor Jehan Kabani; R. Mark Henkelman (NeuroImage, 2008)

Longitudinal neuroanatomical changes determined by deformation-based morphometry in a mouse model of Alzheimer's disease. - Jonathan C. Lau; Jason P. Lerch; John G. Sled; R. Mark Henkelman; Alan C. Evans; Barry J. Bedell (NeuroImage, 2008)

Cortical thickness measured from MRI in the YAC128 mouse model of Huntington's disease. - Jason P. Lerch; Jeffrey B. Carroll; Adrienne Dorr; Shoshana Spring; Alan C. Evans; Michael R. Hayden; John G. Sled; R. Mark Henkelman (NeuroImage, 2008)

Automated deformation analysis in the YAC128 Huntington disease mouse model. - Jason P. Lerch; Jeffrey B. Carroll; Shoshana Spring; Lisa N. Bertram; Claudia Schwab; Michael R. Hayden; R. Mark Henkelman (NeuroImage, 2008)

Measurement of cerebral blood volume in mouse brain regions using micro-computed tomography. - Brige P. Chugh; Jason P. Lerch; Lisa X. Yu; Martin Pienkowski; Robert V. Harrison; R. Mark Henkelman; John G. Sled (NeuroImage, 2009)

Variance decomposition of MRI-based covariance maps using genetically informative samples and structural equation modeling. - J. Eric Schmitt; Rhoshel K. Lenroot; Sarah E. Ordaz; Gregory L. Wallace; Jason P. Lerch; Alan C. Evans; Elizabeth C. Prom; Kenneth S. Kendler; Michael C. Neale; Jay N. Giedd (NeuroImage, 2009)

Anatomical phenotyping in a mouse model of fragile X syndrome with magnetic resonance imaging. - Jacob Ellegood; Laura K. Pacey; David R. Hampson; Jason P. Lerch; R. Mark Henkelman (NeuroImage, 2010)

Erratum to "Cortical anatomy in human X monosomy" [NeuroImage 49 (2010) 2915-2923]. - Armin Raznahan; William Cutter; François Lalonde; Dene Robertson; Eileen M. Daly; Gerard S. Conway; David H. Skuse; Judith Ross; Jason P. Lerch; Jay N. Giedd; Declan G. M. Murphy (NeuroImage, 2010)

Cortical anatomy in human X monosomy. - Armin Raznahan; William Cutter; François Lalonde; Dene Robertson; Eileen M. Daly; Gerard S. Conway; David H. Skuse; Judith Ross; Jason P. Lerch; Jay N. Giedd; Declan G. M. Murphy (NeuroImage, 2010)

Cerebral asymmetries in 12-week-old C57Bl/6J mice measured by magnetic resonance imaging. - Shoshana Spring; Jason P. Lerch; Monica K. Wetzel; Alan C. Evans; R. Mark Henkelman (NeuroImage, 2010)

Semi-Automatic Segmentation of Multiple Mouse Embryos in MR Images. - Leila Baghdadi; Mojdeh Zamyadi; John G. Sled; Jürgen E. Schneider; Shuomo Bhattacharya; R. Mark Henkelman; Jason P. Lerch (BMC Bioinform., 2011)

Maze training in mice induces MRI-detectable brain shape changes specific to the type of learning. - Jason P. Lerch; Adelaide P. Yiu; Alonso Martinez-Canabal; Tetyana Pekar; Veronique D. Bohbot; Paul W. Frankland; R. Mark Henkelman; Sheena A. Josselyn; John G. Sled (NeuroImage, 2011)

The pipeline system for Octave and Matlab (PSOM): a lightweight scripting framework and execution engine for scientific workflows. - Pierre Bellec; Sébastien Lavoie-Courchesne; Phil Dickinson; Jason P. Lerch; Alex P. Zijdenbos; Alan C. Evans (Frontiers Neuroinformatics, 2012)

Wanted dead or alive? The tradeoff between in-vivo versus ex-vivo MR brain imaging in the mouse. - Jason P. Lerch; Lisa Gazdzinski; Jürgen Germann; John G. Sled; R. Mark Henkelman; Brian J. Nieman (Frontiers Neuroinformatics, 2012)

Preparation of fixed mouse brains for MRI. - Lindsay S. Cahill; Christine L. Laliberté; Jacob Ellegood; Shoshana Spring; Jacqueline A. Gleave; Matthijs C. van Eede; Jason P. Lerch; R. Mark Henkelman (NeuroImage, 2012)

Mapping registration sensitivity in MR mouse brain images. - Matthijs C. van Eede; Jan Scholz; M. Mallar Chakravarty; R. Mark Henkelman; Jason P. Lerch (NeuroImage, 2013)

Neuroanatomical analysis of the BTBR mouse model of autism using magnetic resonance imaging and diffusion tensor imaging. - Jacob Ellegood; Brooke A. Babineau; R. Mark Henkelman; Jason P. Lerch; Jacqueline N. Crawley (NeuroImage, 2013)

Hippocampal volumes differ across the mouse estrous cycle, can change within 24 hours, and associate with cognitive strategies. - Lily R. Qiu; Jürgen Germann; Shoshana Spring; Christina Alm; Dulcie A. Vousden; Mark R. Palmert; Jason P. Lerch (NeuroImage, 2013)

High resolution whole brain imaging of anatomical variation in XO, XX, and XY mice. - Armin Raznahan; Frank Probst; Mark R. Palmert; Jay N. Giedd; Jason P. Lerch (NeuroImage, 2013)

Identification of a Functional Connectome for Long-Term Fear Memory in Mice. - Anne L. Wheeler; Cátia M. Teixeira; Afra H. Wang; Xuejian Xiong; Natasa Kovacevic; Jason P. Lerch; Anthony Randal McIntosh; John Parkinson; Paul W. Frankland (PLoS Comput. Biol., 2013)

Improved method for automatic cerebrovascular labelling using stochastic tunnelling. - Sahar Ghanavati; Jason P. Lerch; John G. Sled (PRNI, 2014)

Pydpiper: a flexible toolkit for constructing novel registration pipelines. - Miriam Friedel; Matthijs C. van Eede; Jon Pipitone; M. Mallar Chakravarty; Jason P. Lerch (Frontiers Neuroinformatics, 2014)

Automatic anatomical labeling of the complete cerebral vasculature in mouse models. - Sahar Ghanavati; Jason P. Lerch; John G. Sled (NeuroImage, 2014)

Derivation of high-resolution MRI atlases of the human cerebellum at 3 T and segmentation using multiple automatically generated templates. - Min Tae M. Park; Jon Pipitone; Lawrence H. Baer; Julie L. Winterburn; Yashvi Shah; Sofia Chavez; Mark M. Schira; Nancy J. Lobaugh; Jason P. Lerch; Aristotle N. Voineskos; M. Mallar Chakravarty (NeuroImage, 2014)

Multi-atlas segmentation of the whole hippocampus and subfields using multiple automatically generated templates. - Jon Pipitone; Min Tae M. Park; Julie L. Winterburn; Tristram A. Lett; Jason P. Lerch; Jens C. Pruessner; Martin D. Lepage; Aristotle N. Voineskos; M. Mallar Chakravarty (NeuroImage, 2014)

MRI-detectable changes in mouse brain structure induced by voluntary exercise. - Lindsay S. Cahill; Patrick E. Steadman; Carly E. Jones; Christine L. Laliberté; Jun Dazai; Jason P. Lerch; Bojana Stefanovic; John G. Sled (NeuroImage, 2015)

Environmental enrichment is associated with rapid volumetric brain changes in adult mice. - Jan Scholz; Rylan Allemang-Grand; Jun Dazai; Jason P. Lerch (NeuroImage, 2015)

Rotarod training in mice is associated with changes in brain structure observable with multimodal MRI. - Jan Scholz; Yosuke Niibori; Paul W. Frankland; Jason P. Lerch (NeuroImage, 2015)

4D MEMRI atlas of neonatal FVB/N mouse brain development. - Kamila U. Szulc; Jason P. Lerch; Brian J. Nieman; Benjamin B. Bartelle; Miriam Friedel; Giselle A. Suero-Abreu; Charles Watson; Alexandra L. Joyner; Daniel H. Turnbull (NeuroImage, 2015)

MINC 2.0: A Flexible Format for Multi-Modal Images. - Robert D. Vincent; Peter Neelin; Najmeh Khalili-Mahani; Andrew L. Janke; Vladimir S. Fonov; Steven M. Robbins; Leila Baghdadi; Jason P. Lerch; John G. Sled; Reza Adalat; David MacDonald; Alex P. Zijdenbos; et al. (Frontiers Neuroinformatics, 2016)

Deep brain stimulation of the ventromedial prefrontal cortex causes reorganization of neuronal processes and vasculature. - M. Mallar Chakravarty; Clement Hamani; Alonso Martinez-Canabal; Jacob Ellegood; Christine L. Laliberté; José N. Nobrega; Tejas Sankar; Andres M. Lozano; Paul W. Frankland; Jason P. Lerch (NeuroImage, 2016)

Variability of brain anatomy for three common mouse strains. - Jan Scholz; Christine L. Laliberté; Matthijs C. van Eede; Jason P. Lerch; R. Mark Henkelman (NeuroImage, 2016)

Spatial gene expression analysis of neuroanatomical differences in mouse models. - Darren J. Fernandes; Jacob Ellegood; Rand Askalan; Randy D. Blakely; Emanuel Dicicco-Bloom; Sean E. Egan; Lucy R. Osborne; Craig M. Powell; Armin Raznahan; Diane M. Robins; Michael W. Salter; Ameet S. Sengar; et al. (NeuroImage, 2017)

Regional brain volume changes following chronic antipsychotic administration are mediated by the dopamine D2 receptor. - Elisa Guma; Jill Rocchetti; Gabriel A. Devenyi; Arnaud Tanti; Axel Mathieu; Jason P. Lerch; Guillaume Elgbeili; Blandine Courcot; Naguib Mechawar; M. Mallar Chakravarty; Bruno Giros (NeuroImage, 2018)

Continuous manganese delivery via osmotic pumps for manganese-enhanced mouse MRI does not impair spatial learning but leads to skin ulceration. - Dulcie A. Vousden; Elizabeth Cox; Rylan Allemang-Grand; Christine L. Laliberté; Lily R. Qiu; Zsuzsa Lindenmaier; Brian J. Nieman; Jason P. Lerch (NeuroImage, 2018)

Impact of X/Y genes and sex hormones on mouse neuroanatomy. - Dulcie A. Vousden; Christina Corre; Shoshana Spring; Lily R. Qiu; Ariane Metcalf; Elizabeth Cox; Jason P. Lerch; Mark R. Palmert (NeuroImage, 2018)

Structural covariance of brain region volumes is associated with both structural connectivity and transcriptomic similarity. - Yohan Yee; Darren J. Fernandes; Leon French; Jacob Ellegood; Lindsay S. Cahill; Dulcie A. Vousden; Leigh Spencer Noakes; Jan Scholz; Matthijs C. van Eede; Brian J. Nieman; John G. Sled; Jason P. Lerch (NeuroImage, 2018)

Animal Functional Magnetic Resonance Imaging: Trends and Path Toward Standardization. - Francesca Mandino; Domenic H. Cerri; Clément M. Garin; Milou Straathof; Geralda A. F. van Tilborg; M. Mallar Chakravarty; Marc Dhenain; Rick M. Dijkhuizen; Alessandro Gozzi; Andreas Hess 001; Shella D. Keilholz; Jason P. Lerch; et al. (Frontiers Neuroinformatics, 2019)

Imaging baby brain development. - Hao Huang 016; Petra S. Huppi; Yong He; Jason P. Lerch (NeuroImage, 2019)

Sex-biased trajectories of amygdalo-hippocampal morphology change over human development. - Ari M. Fish; Ajay Nadig; Jakob Seidlitz; Paul K. Reardon; Catherine Mankiw; Cassidy L. McDermott; Jonathan D. Blumenthal; Liv S. Clasen; François Lalonde; Jason P. Lerch; M. Mallar Chakravarty; Russell T. Shinohara; et al. (NeuroImage, 2020)

Longitudinal MEMRI analysis of brain phenotypes in a mouse model of Niemann-Pick Type C disease. - Harikrishna Rallapalli; Benjamin C. Darwin; Estefania Toro-Montoya; Jason P. Lerch; Daniel H. Turnbull (NeuroImage, 2020)

Magnetic Resonance Imaging Sequence Identification Using a Metadata Learning Approach. - Shuai Liang; Derek Beaton; Stephen R. Arnott; Tom Gee; Mojdeh Zamyadi; Robert Bartha; Sean Symons; Glenda M. MacQueen; Stefanie Hassel; Jason P. Lerch; Evdokia Anagnostou; Raymond W. Lam; et al. (Frontiers Neuroinformatics, 2021)

Characterization of mice bearing humanized androgen receptor genes (h/mAr) varying in polymorphism length. - Zsuzsa Lindenmaier; Yohan Yee; Adrienne Kinman; Darren J. Fernandes; Jacob Ellegood; Christie L. Burton; Diane M. Robins; Armin Raznahan; Paul Arnold; Jason P. Lerch (NeuroImage, 2021)

A ketogenic diet affects brain volume and metabolome in juvenile mice. - Shyamchand Mayengbam; Jacob Ellegood; Mitch Kesler; Raylene A. Reimer; Jane Shearer; Kartikeya Murari; Jong M. Rho; Jason P. Lerch; Ning Cheng (NeuroImage, 2021)

Characterizing Inscapes and resting-state in MEG: Effects in typical and atypical development. - Marlee M. Vandewouw; Benjamin T. Dunkley; Jason P. Lerch; Evdokia Anagnostou; Margot J. Taylor (NeuroImage, 2021)

Multiple-mouse magnetic resonance imaging with cryogenic radiofrequency probes for evaluation of brain development. - A. Arbabi; Leigh Spencer Noakes; Dulcie A. Vousden; J. Dazai; Shoshana Spring; O. Botelho; T. Keshavarzian; M. Mattingly; Jacob Ellegood; L. M. J. Nutter; R. Wissmann; John G. Sled; et al. (NeuroImage, 2022)

Examining the effect of chronic intranasal oxytocin administration on the neuroanatomy and behavior of three autism-related mouse models. - Zsuzsa Lindenmaier; Jacob Ellegood; Monique Stuive; Kaitlyn Easson; Yohan Yee; Darren J. Fernandes; Jane Foster; Evdokia Anagnostou; Jason P. Lerch (NeuroImage, 2022)

Systematic comparisons of different quality control approaches applied to three large pediatric neuroimaging datasets. - Hajer Nakua; Colin Hawco; Natalie J. Forde; Michael Joseph; Maud Grillet; Delaney Johnson; Grace R. Jacobs; Sean L. Hill; Aristotle N. Voineskos; Anne L. Wheeler; Meng-Chuan Lai; Peter Szatmari; et al. (NeuroImage, 2023)

Identifying novel data-driven subgroups in congenital heart disease using multi-modal measures of brain structure. - Marlee M. Vandewouw; Ami Norris-Brilliant; Anum Rahman; Stephania Assimopoulos; Sarah U. Morton; Azadeh Kushki; Sean Cunningham; Eileen King; Elizabeth Goldmuntz; Thomas A. Miller; Nina H. Thomas; Heather R. Adams; et al. (NeuroImage, 2024)

Organization of thalamocortical structural covariance and a corresponding 3D atlas of the mouse thalamus. - Yohan Yee; Jacob Ellegood; Leon French; Jason P. Lerch (NeuroImage, 2024)

Left-Right Brain-Wide Asymmetry of Neuroanatomy in the Mouse Brain. - Andrew Silberfeld; James M. Roe; Jacob Ellegood; Jason P. Lerch; Lily R. Qiu; Yongsoo Kim; Jong Gwan Lee; William D. Hopkins; Joanes Grandjean; Yangming Ou; Olivier Pourquié (NeuroImage, 2025)