Visualization challenges for a new cyberpharmaceutical computing paradigm. - Russell J. Turner; Kabir Chaturvedi; Nathan Edwards; Daniel P. Fasulo; Aaron L. Halpern; Daniel H. Huson; Oliver Kohlbacher; Jason R. Miller; Knut Reinert; Karin A. Remington; Russell Schwartz; Brian Walenz; et al. (IEEE Symposium on Parallel and Large-Data Visualization and Graphics, 2001)

ThurGood: Evaluating Assembly-to-Assembly Mapping. - Hagit Shatkay; Jason R. Miller; Clark M. Mobarry; Michael Flanigan; Shibu Yooseph; Granger G. Sutton (J. Comput. Biol., 2004)

Consensus generation and variant detection by Celera Assembler. - Gennady Denisov; Brian Walenz; Aaron L. Halpern; Jason R. Miller; Nelson Axelrod; Samuel Levy; Granger G. Sutton (Bioinform., 2008)

Aggressive assembly of pyrosequencing reads with mates. - Jason R. Miller; Arthur L. Delcher; Sergey Koren; Eli Venter; Brian Walenz; Anushka Brownley; Justin Johnson 002; Kelvin Li; Clark M. Mobarry; Granger G. Sutton (Bioinform., 2008)

An algorithm for automated closure during assembly. - Sergey Koren; Jason R. Miller; Brian Walenz; Granger G. Sutton (BMC Bioinform., 2010)

The arabidopsis information portal: an application platform for data discovery. - Matthew R. Hanlon; Matthew Vaughn; Stephen A. Mock; Rion Dooley; Walter Moreira; Joe Stubbs; Christopher Town 002; Jason R. Miller; Vivek Krishnakumar; Erik S. Ferlanti; Eleanor Pence (GCE@SC, 2014)

Araport: an application platform for data discovery. - Matthew R. Hanlon; Matthew Vaughn; Stephen A. Mock; Rion Dooley; Walter Moreira; Joe Stubbs; Christopher Town 002; Jason R. Miller; Vivek Krishnakumar; Erik S. Ferlanti; Eleanor Pence (Concurr. Comput. Pract. Exp., 2015)

Araport: the Arabidopsis Information Portal. - Vivek Krishnakumar; Matthew R. Hanlon; Sergio Contrino; Erik S. Ferlanti; Svetlana Karamycheva; Maria Kim; Benjamin D. Rosen; Chia-Yi Cheng; Walter Moreira; Stephen A. Mock; Joseph Stubbs; Julie M. Sullivan; et al. (Nucleic Acids Res., 2015)

Exploring Neural Network Models for LncRNA Sequence Identification. - Jason Rafe Miller; Donald A. Adjeroh (BIBM, 2020)

LncRNA Subcellular Localization Signals - Are the Two Ends Equal? A Machine Learning Analysis Across Multiple Cell Lines. - Weijun Yi; Jason Rafe Miller; Gangqing Hu; Donald A. Adjeroh (BIBM, 2023)

A Machine Learning Approach to Motif Finding for LncRNA Sub-cellular Localization. - Weijun Yi; Jason R. Miller; Gangqing Hu; Donald A. Adjeroh (BIBM, 2024)

Machine learning on alignment features for parent-of-origin classification of simulated hybrid RNA-seq. - Jason R. Miller; Donald A. Adjeroh (BMC Bioinform., 2024)