Tag SNP selection via a genetic algorithm. - Ghasem Mahdevar; Javad Zahiri; Mehdi Sadeghi; Abbas Nowzari-Dalini; Hayedeh Ahrabian (J. Biomed. Informatics, 2010)

Cancer Odor Database (COD): a critical databank for cancer diagnosis research. - Sajjad Janfaza; Maryam Banan Nojavani; Babak Khorsand; Maryam Nikkhah; Javad Zahiri (Database J. Biol. Databases Curation, 2017)

Novel BDNF-regulatory microRNAs in neurodegenerative disorders pathogenesis: An in silico study. - Fatemeh Khani-Habibabadi; Shahrzad Askari; Javad Zahiri; Mohammad Reza Javan; Mehrdad Behmanesh (Comput. Biol. Chem., 2019)

Post-translational modifications in proteins: resources, tools and prediction methods. - Shahin Ramazi; Javad Zahiri (Database J. Biol. Databases Curation, 2021)

Moonlighting protein prediction using physico-chemical and evolutional properties via machine learning methods. - Farshid Shirafkan; Sajjad Gharaghani; Karim Rahimian; Reza Hasan Sajedi; Javad Zahiri (BMC Bioinform., 2021)

Correction to: Moonlighting protein prediction using physico‑chemical and evolutional properties via machine learning methods. - Farshid Shirafkan; Sajjad Gharaghani; Karim Rahimian; Reza Hasan Sajedi; Javad Zahiri (BMC Bioinform., 2021)

Prediction of chemoresistance trait of cancer cell lines using machine learning algorithms and systems biology analysis. - Atousa Ataei; Niloufar Seyed Majidi; Javad Zahiri; Mehrdad Rostami; Seyed Shahriar Arab; Albert Rizvanov (J. Big Data, 2021)

123VCF: an intuitive and efficient tool for filtering VCF files. - Milad Eidi; Samaneh Abdolalizadeh; Soheila Moeini; Masoud Garshasbi; Javad Zahiri (BMC Bioinform., 2024)