Generating Immune-aware SARS-CoV-2 Spike Proteins for Universal Vaccine Design. - Dominic Phillips; Hans-Christof Gasser; Sebesyén Kamp; Aleksander Palkowski; Lukasz Rabalski; Diego A. Oyarzún; Ajitha Rajan; Javier Antonio Alfaro (Healthcare AI and COVID-19 Workshop, 2022)

Vaxformer: Antigenicity-controlled Transformer for Vaccine Design Against SARS-CoV-2. - Aryo Pradipta Gema; Michal Kobiela; Achille Fraisse; Ajitha Rajan; Diego A. Oyarzún; Javier Antonio Alfaro (CoRR, 2023)

Knowledge Graph Embeddings in the Biomedical Domain: Are They Useful? A Look at Link Prediction, Rule Learning, and Downstream Polypharmacy Tasks. - Aryo Pradipta Gema; Dominik Grabarczyk; Wolf De Wulf; Piyush Borole; Javier Antonio Alfaro; Pasquale Minervini; Antonio Vergari; Ajitha Rajan (CoRR, 2023)

The Immunopeptidomics Ontology (ImPO). - Daniel Faria; Patrícia Eugénio; Marta Contreiras Silva; Laura Balbi; Georges Bedran; Ashwin Adrian Kallor; Susana Nunes; Aleksander Palkowski; Michal Waleron; Javier Antonio Alfaro; Catia Pesquita (Database J. Biol. Databases Curation, 2024)