A hierarchical unsupervised growing neural network for clustering gene expression patterns. - Javier Herrero; Alfonso Valencia; Joaquín Dopazo (Bioinform., 2001)

Using Perceptrons for Supervised Classification of DNA Microarray Samples: Obtaining the Optimal Level of Information and Finding Differentially Expressed Genes. - Álvaro Mateos; Javier Herrero; Joaquín Dopazo (ICANN, 2002)

Unsupervised reduction of the dimensionality followed by supervised learning with a perceptron improves the classification of conditions in DNA microarray gene expression data. - Lucía Conde; Álvaro Mateos; Javier Herrero; Joaquín Dopazo (NNSP, 2002)

Using gene ontology on genome-scale studies to find significant associations of biologically relevant terms to groups of genes. - Fátima Al-Shahrour; Javier Herrero; Álvaro Mateos; Javier Santoyo; Ramón Díaz-Uriarte; Joaquín Dopazo (NNSP, 2003)

Using a Genetic Algorithm and a Perceptron for Feature Selection and Supervised Class Learning in DNA Microarray Data. - Michal Karzynski; Álvaro Mateos; Javier Herrero; Joaquín Dopazo (Artif. Intell. Rev., 2003)

Gene expression data preprocessing. - Javier Herrero; Ramón Díaz-Uriarte; Joaquín Dopazo (Bioinform., 2003)

GEPAS: a web-based resource for microarray gene expression data analysis. - Javier Herrero; Fátima Al-Shahrour; Ramón Díaz-Uriarte; Álvaro Mateos; Juan M. Vaquerizas; Javier Santoyo; Joaquín Dopazo (Nucleic Acids Res., 2003)

Improved Class Prediction in DNA Microarray Gene Expression Data by Unsupervised Reduction of the Dimensionality followed by Supervised Learning with a Perceptron. - Lucía Conde; Álvaro Mateos; Javier Herrero; Joaquín Dopazo (J. VLSI Signal Process., 2003)

New challenges in gene expression data analysis and the extended GEPAS. - Javier Herrero; Juan M. Vaquerizas; Fátima Al-Shahrour; Lucía Conde; Álvaro Mateos; Javier Santoyo; Ramón Díaz-Uriarte; Joaquín Dopazo (Nucleic Acids Res., 2004)

Ensembl 2005. - Tim J. P. Hubbard; D. Andrews; Mario Cáccamo; Graham Cameron; Yuan Chen 007; Michele E. Clamp; Laura Clarke; Guy Coates; Tony Cox 001; Fiona Cunningham; Val Curwen; Tim Cutts; et al. (Nucleic Acids Res., 2005)

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. - Juan M. Vaquerizas; Lucía Conde; Patricio Yankilevich; Amaya Cabezón; Pablo Minguez; Ramón Díaz-Uriarte; Fátima Al-Shahrour; Javier Herrero; Joaquín Dopazo (Nucleic Acids Res., 2005)

Ensembl 2006. - Ewan Birney; T. Daniel Andrews; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Tony Cox 001; Fiona Cunningham; Val Curwen; Tim Cutts; Thomas A. Down; Richard Durbin; et al. (Nucleic Acids Res., 2006)

Next station in microarray data analysis: GEPAS. - David Montaner; Joaquín Tárraga; Jaime Huerta-Cepas; Jordi Burguet-Castell; Juan M. Vaquerizas; Lucía Conde; Pablo Minguez; Javier Vera; Sach Mukherjee; Joan Valls; Miguel A. G. Pujana; Eva Alloza; et al. (Nucleic Acids Res., 2006)

Ensembl 2007. - Tim J. P. Hubbard; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2007)

Ensembl 2008. - Paul Flicek; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2008)

Surgical Planning and Patient-Specific Biomechanical Simulation for Tracheal Endoprostheses Interventions. - Miguel Ángel González Ballester; Amaya Pérez del Palomar; José Luís López Villalobos; Laura Lara Rodríguez; Olfa Trabelsi; Frederic Pérez; Ángel Ginel Cañamaque; Emilia Barrot Cortés; Francisco Rodríguez Panadero; Manuel Doblaré Castellano; Javier Herrero Jover (MICCAI (1), 2009)

Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment. - Benedict Paten; Javier Herrero; Kathryn Beal; Ewan Birney (Bioinform., 2009)

Ensembl 2009. - Tim J. P. Hubbard; Bronwen L. Aken; Sarah C. Ayling; Benoît Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen 007; Peter Clapham; Laura Clarke; Guy Coates; Susan Fairley; et al. (Nucleic Acids Res., 2009)

eHive: An Artificial Intelligence workflow system for genomic analysis. - Jessica Severin; Kathryn Beal; Albert J. Vilella; Stephen Fitzgerald; Michael Schuster; Leo Gordon; Abel Ureta-Vidal; Paul Flicek; Javier Herrero (BMC Bioinform., 2010)

Ensembl's 10th year. - Paul Flicek; Bronwen L. Aken; Benoît Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen 007; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Julio Fernandez-Banet; et al. (Nucleic Acids Res., 2010)

Ensembl Genomes: Extending Ensembl across the taxonomic space. - Paul J. Kersey; Daniel Lawson; Ewan Birney; Paul S. Derwent; Matthias Haimel; Javier Herrero; Stephen Keenan; Arnaud Kerhornou; Gautier Koscielny; Andreas Kähäri; Rhoda Kinsella; Eugene Kulesha; et al. (Nucleic Acids Res., 2010)

Ensembl 2011. - Paul Flicek; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Yuan Chen 007; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Leo Gordon; Maurice Hendrix; et al. (Nucleic Acids Res., 2011)

Supervised Learning Modelization and Segmentation of Cardiac Scar in Delayed Enhanced MRI. - Laura Lara Rodríguez; Sergio Vera; Frederic Pérez; Nico Lanconelli; Rita Morisi; Bruno Donini; Dario Turco; Cristiana Corsi; Claudio Lamberti; Giovana Gavidia; Maurizio Bordone; Eduardo Soudah; et al. (STACOM, 2012)

Toward community standards in the quest for orthologs. - Christophe Dessimoz; Toni Gabaldón; David S. Roos; Erik L. L. Sonnhammer; Javier Herrero (Bioinform., 2012)

Ensembl 2012. - Paul Flicek; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Laurent Gil; Leo Gordon; et al. (Nucleic Acids Res., 2012)

Functional simulation of the cochlea for implant optimization. - Mario Ceresa; Frederic Pérez; Sergio Vera; Noemí Carranza; Javier Herrero Jover; Pavel Mistrik; Miguel Ángel González Ballester (EMBC, 2013)

Automated annotation removal in agar plates. - Sergio Vera; Frederic Pérez; Laura Lara Rodríguez; Mario Ceresa; Noemí Carranza; Javier Herrero Jover; Miguel Ángel González Ballester (EMBC, 2013)

Surgical Workflow Analysis, Design and Development of an Image-Based Navigation System for Endoscopic Interventions. - Frederic Pérez; Sergio Vera; Gloria Fernández-Esparrach; Henry Córdova; Raúl San José Estépar; Javier Herrero Jover; Miguel Ángel González Ballester (CLIP, 2013)

RADStation3G: A platform for cardiovascular image analysis integrating PACS, 3D+t visualization and grid computing. - Frederic Pérez; Jordi Huguet; R. Aguilar; Laura Lara Rodríguez; Ignacio Larrabide; Maria-Cruz Villa-Uriol; J. López; Juan M. Macho; A. Rigo; J. Rosselló; Sergio Vera; Elio Vivas; et al. (Comput. Methods Programs Biomed., 2013)

Ensembl 2013. - Paul Flicek; Ikhlak Ahmed; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Laurent Gil; et al. (Nucleic Acids Res., 2013)

Ensembl 2014. - Paul Flicek; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Konstantinos Billis; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Stephen Fitzgerald; Laurent Gil; Carlos García-Girón; et al. (Nucleic Acids Res., 2014)

Ensembl comparative genomics resources. - Javier Herrero; Matthieu Muffato; Kathryn Beal; Stephen Fitzgerald; Leo Gordon; Miguel Pignatelli; Albert J. Vilella; Stephen M. J. Searle; M. Ridwan Amode; Simon Brent; William Spooner; Eugene Kulesha; et al. (Database J. Biol. Databases Curation, 2016)

ncRNA orthologies in the vertebrate lineage. - Miguel Pignatelli; Albert J. Vilella; Matthieu Muffato; Leo Gordon; Simon White; Paul Flicek; Javier Herrero (Database J. Biol. Databases Curation, 2016)

Quantification of tumour evolution and heterogeneity via Bayesian epiallele detection. - James E. Barrett; Andrew Feber; Javier Herrero; Miljana Tanic; Gareth A. Wilson; Charles Swanton; Stephan Beck 002 (BMC Bioinform., 2017)

Quantifying Snow Cover Distribution in Semiarid Regions Combining Satellite and Terrestrial Imagery. - Rafael Pimentel; Javier Herrero; María José Polo (Remote. Sens., 2017)

A reference architecture for space systems. - Elena Alaña; Javier Herrero; Santiago Urueña; Krystyna Macioszek; Daniel Silveira (ECSA (Companion), 2018)

The TV-AssistDem Project: A TV-Based Platform for Coping with Mild Cognitive Impairment. - Gabriella Cortellessa; Francesca Fracasso; Alessandro Umbrico; Amedeo Cesta; Fermin Mayoral; Pilar Barnestein-Fonseca; Elisa Vera García; Diana Toma; Flavia Boghiu; Rodolphe Dewarrat; Valentina Triantafyllidou; Javier Herrero; et al. (ForItAAL, 2018)

Combining Remote Sensing and Terrestrial Photography in a Snowmelt Modeling Framework to Retrieve Snow Evolution in a Semi-Arid Region. - María José Polo; Javier Herrero; Rafael Pimentel; María José Pérez-Palazón; Ana Gilabert; Pedro Torraibo (IGARSS, 2018)

Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability. - Jia-Ming Chang; Evan W. Floden; Javier Herrero; Olivier Gascuel; Paolo Di Tommaso; Cédric Notredame (Bioinform., 2021)

Co-design of a TV-based home support for early stage of dementia. - Gabriella Cortellessa; Francesca Fracasso; Alessandro Umbrico; Amedeo Cesta; Pietro Dionisio; Lorenzo Ciucci; Fabrizio Di Guardo; Elena Tamburini; Miguel Ángel Pérez; Javier Herrero; Valentina Triantafyllidou; Rodolphe Dewarrat; et al. (J. Ambient Intell. Humaniz. Comput., 2021)