Is a Good Offensive Always the Best Defense? - Javier Quetzalcóatl Toledo-Marín; Rogelio Díaz-Méndez; Marcelo del Castillo-Mussot (IGTR, 2017)

Using Deep LSD to build operators in GANs latent space with meaning in real space. - Javier Quetzalcóatl Toledo-Marín; James A. Glazier (CoRR, 2021)

Deep learning approaches to surrogates for solving the diffusion equation for mechanistic real-world simulations. - Javier Quetzalcóatl Toledo-Marín; Geoffrey C. Fox; James P. Sluka; James A. Glazier (CoRR, 2021)

Analyzing the Performance of Deep Encoder-Decoder Networks as Surrogates for a Diffusion Equation. - Javier Quetzalcóatl Toledo-Marín; James A. Glazier; Geoffrey C. Fox (CoRR, 2023)

CaloQVAE : Simulating high-energy particle-calorimeter interactions using hybrid quantum-classical generative models. - Sehmimul Hoque; Hao Jia; Abhishek Abhishek; Mojde Fadaie; Javier Quetzalcóatl Toledo-Marín; Tiago Vale; Roger G. Melko; Maximilian Swiatlowski; Wojciech T. Fedorko (CoRR, 2023)

Calo4pQVAE: Quantum-Assisted 4-Partite VAE Surrogate for High Energy Particle-Calorimeter Interactions. - Sebastian Gonzalez; Hao Jia; Javier Quetzalcóatl Toledo-Marín; Sehmimul Hoque; Abhishek Abhishek; Ian Lu; Deniz Sogutlu; Sören Anderson; Colin Gay; Eric Paquet; Roger G. Melko; Geoffrey C. Fox; et al. (QCE, 2024)

Feasibility Study on Active Learning of Smart Surrogates for Scientific Simulations. - Pradeep Bajracharya; Javier Quetzalcóatl Toledo-Marín; Geoffrey C. Fox; Shantenu Jha; Linwei Wang (CoRR, 2024)

Conditioned quantum-assisted deep generative surrogate for particle-calorimeter interactions. - Javier Quetzalcóatl Toledo-Marín; Sebastian Gonzalez; Hao Jia; Ian Lu; Deniz Sogutlu; Abhishek Abhishek; Colin Gay; Eric Paquet; Roger G. Melko; Geoffrey C. Fox; Maximilian Swiatlowski; Wojciech Fedorko (CoRR, 2024)

Zephyr quantum-assisted hierarchical Calo4pQVAE for particle-calorimeter interactions. - Ian Lu; Hao Jia; Sebastian Gonzalez; Deniz Sogutlu; Javier Quetzalcóatl Toledo-Marín; Sehmimul Hoque; Abhishek Abhishek; Colin Gay; Roger G. Melko; Eric Paquet; Geoffrey C. Fox; Maximilian Swiatlowski; et al. (CoRR, 2024)

Exploring the Energy Landscape of RBMs: Reciprocal Space Insights into Bosons, Hierarchical Learning and Symmetry Breaking. - Javier Quetzalcóatl Toledo-Marín; Anindita Maiti; Geoffrey C. Fox; Roger G. Melko (CoRR, 2025)

Surrogate modeling of Cellular-Potts Agent-Based Models as a segmentation task using the U-Net neural network architecture. - Tien Comlekoglu; Javier Quetzalcóatl Toledo-Marín; Tina Comlekoglu; Douglas W. DeSimone; Shayn M. Peirce; Geoffrey C. Fox; James A. Glazier (CoRR, 2025)

Generative diffusion model surrogates for mechanistic agent-based biological models. - Tien Comlekoglu; Javier Quetzalcóatl Toledo-Marín; Douglas W. DeSimone; Shayn M. Peirce; Geoffrey C. Fox; James A. Glazier (CoRR, 2025)