A computational genomics pipeline for prokaryotic sequencing projects. - Andrey Kislyuk; Lee S. Katz; Sonia Agrawal; Matthew S. Hagen; Andrew B. Conley; Pushkala Jayaraman; Viswateja Nelakuditi; Jay C. Humphrey; Scott A. Sammons; Dhwani Govil; Raydel D. Mair; Kathleen M. Tatti; et al. (Bioinform., 2010)

Neisseria Base: a comparative genomics database for Neisseria meningitidis. - Lee S. Katz; Jay C. Humphrey; Andrew B. Conley; Viswateja Nelakuditi; Andrey Kislyuk; Sonia Agrawal; Pushkala Jayaraman; Brian H. Harcourt; Melissa A. Olsen-Rasmussen; Michael Frace; Nitya V. Sharma; Leonard W. Mayer; et al. (Database J. Biol. Databases Curation, 2011)

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species. - Paul J. Kersey; Daniel M. Staines; Daniel Lawson; Eugene Kulesha; Paul S. Derwent; Jay C. Humphrey; Daniel S. T. Hughes; Stephen Keenan; Arnaud Kerhornou; Gautier Koscielny; Nicholas Langridge; Mark D. McDowall; et al. (Nucleic Acids Res., 2012)

Ensembl Genomes 2013: scaling up access to genome-wide data. - Paul Julian Kersey; James E. Allen; Mikkel B. Christensen; Paul Davis 001; Lee J. Falin; Christoph Grabmueller; Daniel Seth Toney Hughes; Jay C. Humphrey; Arnaud Kerhornou; Julia Khobova; Nicholas Langridge; Mark D. McDowall; et al. (Nucleic Acids Res., 2014)

Ensembl Genomes 2016: more genomes, more complexity. - Paul Julian Kersey; James E. Allen; Irina M. Armean; Sanjay Boddu; Bruce J. Bolt; Denise Carvalho-Silva; Mikkel B. Christensen; Paul Davis 001; Lee J. Falin; Christoph Grabmueller; Jay C. Humphrey; Arnaud Kerhornou; et al. (Nucleic Acids Res., 2016)

Practical Recommendations for Supporting a Systems Biology Cyberinfrastructure. - Jeremy D. DeBarry; Jessica C. Kissinger; Mustafa V. Nural; Suman B. Pakala; Jay C. Humphrey; Esmeralda V. S. Meyer; Regina Joice Cordy; Monica Cabrera-Mora; Elizabeth D. Trippe; Jacob B. Aguilar; Ebru Karpuzoglu; Yi H. Yan; et al. (Data Sci. J., 2020)

VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. - Beatrice Amos; Cristina Aurrecoechea; Matthieu Barba; Ana Barreto; Evelina Y. Basenko; Wojciech Bazant; Robert Belnap; Ann S. Blevins; Ulrike Böhme; John Brestelli; Brian P. Brunk; Mark J. Caddick; et al. (Nucleic Acids Res., 2022)